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- Identifying new methods to diagnose, prevent and treat infections before they become life-threatening
- Research OfficerInstitute for Molecular Bioscience
Coin Group
Group Leader
Dr Lachlan Coin
Honorary Associate ProfessorInstitute for Molecular BioscienceResearcher profile is public:0Supervisor:Body:Highlights
Professor Lachlan Coin is a mathematician with a research focus on developing genomics and bioinformatics tools in infectious disease and cancer. He was originally drawn by the rigour and intellectual challenge of pure mathematics but now uses his maths background as a toolkit for solving complex problems in analysing high throughput biological data.
Professor Coin is best known for using approaches borrowed from machine learning, statistics and probability theory to interrogate genomic data.
In particular, Professor Coin has focussed on using these approaches to uncover genomic deletions and amplifications and has identified changes that are associated with increased risk of obesity and diabetes.
He has also developed approaches for finding minimal biomarker signatures associated with disease, and has applied these approaches to find biomarkers that distinguish bacterial from viral infection, and for the presence of active tuberculosis infection. He is also applying his methodology to develop a diagnostic tool for cancer from cell free DNA
Ultimately, Professor Coin is motivated by making discoveries that are routinely used in clinical practice and to inform public policy to improve health outcomes.
Professor Coin holds an Honorary Professor appointment with UQ, and is a Professor at the Doherty Institute at the University of Melbourne.
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Researchers
Mrs Tania Da Silva Duarte
Postdoctoral Research FellowInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Dr Quan Nguyen
Senior Research FellowInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Researcher biography:Dr Quan Nguyen is a Group Leader at the Institute for Molecular Bioscience (IMB), The University of Queensland. He is leading the Genomics and Machine Learning (GML) lab to study neuroinflammation and cancer-immune cells at single-cell resolution and within spatial morphological tissue context. His research interest is about revealing gene and cell regulators that determine the states of the complex cancer and neuronal ecosystems. Particularly, he is interested in quantifying cellular diversity and the dynamics of cell-cell interactions within the tissues to find ways to improve cancer diagnosis or cell-type specific treatments or the immunoinflammation responses that cause neuronal disease.
Using machine learning and genomic approaches, his group are integrating single-cell spatiotemporal sequencing data with tissue imaging data to find causal links between cellular genotypes, tissue microenvironment, and disease phenotypes. GML lab is also developing experimental technologies that enable large-scale profiling of spatial gene and protein expression (spatial omics) in a range of cancer tissues (focusing on brain and skin cancer) and in mouse brain and spinal cord.
Dr Quan Nguyen completed a PhD in Bioengineering at the University of Queensland in 2013, postdoctoral training in Bioinformatics at RIKEN institute in Japan in 2015, a CSIRO Office of Chief Executive (OCE) Research Fellowship in 2016, an IMB Fellow in 2018, an Australian Research Council DECRA fellowship (2019-2021), and is currently a National Health and Medical Research Council leadership fellow (EL2). He has published in top-tier journals, including Cell, Cell Stem Cell, Nature Methods, Nature Protocols, Nature Communications, Genome Research, Genome Biology and a prize-winning paper in GigaScience. In the past three years, he has contributed to the development of x8 open-source software, x2 web applications, and x4 databases for analysis of single-cell data and spatial transcriptomics. He is looking for enthusiastic research students and research staff to join his group.
Students
Dr Son Nguyen
Higher degree by research (PhD) studentInstitute for Molecular BioscienceResearcher profile is public:0Supervisor:Ms Miranda Pitt
Higher degree by research (PhD) studentInstitute for Molecular BioscienceResearcher profile is public:0Supervisor:Mr Haojing Shao
Higher degree by research (PhD) studentInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Mr Chenxi Zhou
Higher degree by research (PhD) studentInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Mr Hyun Jae Lee
Higher degree by research (PhD) studentInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Ms Janice Reid
Honours studentInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Ms Dilys Li
Honours studentInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Support staff
- Postdoctoral Research FellowInstitute for Molecular Bioscience
- Higher degree by research (PhD) studentInstitute for Molecular Bioscience
Henderson Group
Group Leader
Professor Ian Henderson
Institute for Molecular BioscienceResearcher profile is public:1Supervisor:Body:Professor Ian Henderson is the Executive Director of the Institute for Molecular Bioscience at The University of Queensland. In this role, he is responsible for developing the research strategy of an established, world-leading research institute with over 500 staff and students, fostering collaboration and raising the profile of the Institute and University internationally.
Prior to becoming Executive Director, he was Deputy Director (Research) at IMB. Professor Henderson was previously the Director of the Institute of Microbiology and Infection at University of Birmingham from 2015-2018.
He is a Professor of Microbial Biology who completed his Bachelor of Science (Hons) at University College Dublin and his PhD at Trinity College Dublin. He also holds a Postgraduate Certificate in Teaching and Learning in Higher Education from The University of Birmingham. Professor Henderson is a Fellow of the Royal Society of Biology.
Professor Henderson's research interests focus on the cell surface of bacteria. This focus is based on the philosophy that the bacterial cell surface offers a rich source of molecules, which can be utilised and adapted to diagnose, prevent or treat infections that can lead to life-threatening disease in humans and animals.
His research group has three major themes exploiting a range of experimental techniques to address fundamental questions in the biology of host-pathogen interactions:
(1) Using biochemical and biophysical methodologies to study protein secretion in Gram negative bacteria
(2) using molecular biology, cellular biology and immunological methodologies to study the roles outer membrane proteins play in the interaction of pathogens with their hosts
(3) using genetic, structural, biochemical and biophysical techniques to understand the molecular basis for the integrity of the Gram-negative outer membrane.Professor Henderson has published over 150 research papers, reviews and book chapters. He has an H-index of 62, and his publications have been cited over 15,000 times, with an average of 100 citations per paper.
Researchers
Dr Emily Goodall
Research OfficerInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Mr Le Dat
Research VisitorInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Dr Rochelle Da Costa
Postdoctoral Research FellowInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:PhD Students
Dr Freya Hodges
Postdoctoral Research FellowInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Mr Weine Kok
Global Challenges ScholarInstitute for Molecular BioscienceResearcher profile is public:0Supervisor:Miss Nicole Martinelli
PhD studentInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:Mr Jerry Yang
PhD studentInstitute for Molecular BioscienceResearcher profile is public:1Supervisor:- Group Leader, Statistical Genomics
- Adjunct Senior FellowInstitute for Molecular Bioscience
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