The following workshop and presentation has been written by Dr Nicholas Hamilton (IMB) ( and very generously made available here.


This workshop provides a brief introduction to Machine Learning (ML) and introduces you how to perform your own machine learning segmentations in FIJI using the Weka Plugin.

Topics Covered

  • Types of Machine Learning (supervised, unsupervised, reinforcement)
  • Support Vector Machine
  • Classifying images
  • Image Segmentation (classifying pixels in an image)
  • Trainable Weka image segmentation in ImageJ/FIJI

Workshop Files

The talk and exercise files can be downloaded from the following link: