Mr Nicholas Matigian

Raghubar, Arti M., Crawford, Joanna, Jones, Kahli, Lam, Pui Y., Andersen, Stacey B., Matigian, Nicholas A., Ng, Monica S Y, Healy, Helen, Kassianos, Andrew J. and Mallett, Andrew J. (2023). Spatial transcriptomics in kidney tissue. Kidney research: experimental protocols. (pp. 233-282) edited by Tim D. Hewitson, Nigel D. Toussaint and Edward R. Smith. New York, NY USA: Humana New York. doi: 10.1007/978-1-0716-3179-9_17

Raghubar, Arti M., Matigian, Nicholas A., Crawford, Joanna, Francis, Leo, Ellis, Robert, Healy, Helen G., Kassianos, Andrew J., Ng, Monica S. Y., Roberts, Matthew J., Wood, Simon and Mallett, Andrew J. (2023). High risk clear cell renal cell carcinoma microenvironments contain protumour immunophenotypes lacking specific immune checkpoints. npj Precision Oncology, 7 (1) 88, 1-9. doi: 10.1038/s41698-023-00441-5

Li, Jennifer S.Y., Robertson, Harry, Trinh, Katie, Raghubar, Arti M., Nguyen, Quan, Matigian, Nicholas, Patrick, Ellis, Thomson, Angus W., Mallett, Andrew J. and Rogers, Natasha M. (2023). Tolerogenic dendritic cells protect against acute kidney injury. Kidney International, 104 (3), 492-507. doi: 10.1016/j.kint.2023.05.008

Leiter, Odette, Brici, David, Fletcher, Stephen J., Yong, Xuan Ling Hilary, Widagdo, Jocelyn, Matigian, Nicholas, Schroer, Adam B., Bieri, Gregor, Blackmore, Daniel G., Bartlett, Perry F., Anggono, Victor, Villeda, Saul A. and Walker, Tara L. (2023). Platelet-derived exerkine CXCL4/platelet factor 4 rejuvenates hippocampal neurogenesis and restores cognitive function in aged mice. Nature Communications, 14 (1) 4375, 1-20. doi: 10.1038/s41467-023-39873-9

Monkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Matigian, Nicholas, Cumberbatch, Marie, Bhagat, Milan, Ladwa, Rahul, Mueller, Scott N., Adams, Mark N., O'Byrne, Ken and Kulasinghe, Arutha (2023). Multi‐omic and spatial dissection of immunotherapy response groups in non‐small cell lung cancer. Immunology, 169 (4), 487-502. doi: 10.1111/imm.13646

Li, Jennifer S.Y., Raghubar, Arti M., Matigian, Nicholas A., Ng, Monica S.Y., Rogers, Natasha M. and Mallett, Andrew J (2023). The utility of spatial transcriptomics for solid organ transplantation. Transplantation, 107 (7), 1463-1471. doi: 10.1097/tp.0000000000004466

Windus, Louisa C. E., Matigian, Nicholas and Avery, Vicky M. (2023). Induction of Reactive Bone Stromal Fibroblasts in 3D Models of Prostate Cancer Bone Metastases. Biology, 12 (6) 861, 1-22. doi: 10.3390/biology12060861

Mason, Matt, Wallis, Marianne, Barr, Nigel, Matagian, Nicholas and Lord, Bill (2022). Peripheral intravenous catheter and intraosseous device insertions reported from the 1st July 2016 to 30th June 2017 in an Australian state ambulance service: An observational study. Australasian Emergency Care, 25 (4), 302-307. doi: 10.1016/j.auec.2022.03.001

Raghubar, Arti M., Pham, Duy T., Tan, Xiao, Grice, Laura F., Crawford, Joanna, Lam, Pui Yeng, Andersen, Stacey B., Yoon, Sohye, Teoh, Siok Min, Matigian, Nicholas A., Stewart, Anne, Francis, Leo, Ng, Monica S. Y., Healy, Helen G., Combes, Alexander N., Kassianos, Andrew J., Nguyen, Quan and Mallett, Andrew J. (2022). Spatially resolved transcriptomes of mammalian kidneys illustrate the molecular complexity and interactions of functional nephron segments. Frontiers in Medicine, 9 873923, 873923. doi: 10.3389/fmed.2022.873923

Kulasinghe, Arutha, Monkman, James, Shah, Esha T., Matigian, Nicholas, Adams, Mark N. and O’Byrne, Ken (2022). Spatial profiling identifies prognostic features of response to adjuvant therapy in Triple Negative Breast Cancer (TNBC). Frontiers in Oncology, 11 798296, 798296. doi: 10.3389/fonc.2021.798296

Wilson, Malcolm, O'Connor, Bridget, Matigian, Nicholas and Eather, Geoffrey (2020). Management of isoniazid-monoresistant tuberculosis (Hr-TB) in Queensland, Australia: a retrospective case series. Respiratory Medicine, 173 106163, 1-6. doi: 10.1016/j.rmed.2020.106163

Pavey, Sandra, Pinder, Alex, Fernando, Winnie, D'Arcy, Nicholas, Matigian, Nicholas, Skalamera, Dubravka, Lê Cao, Kim-Anh, Loo-Oey, Dorothy, Hill, Michelle M., Stark, Mitchell, Kimlin, Michael, Burgess, Andrew, Cloonan, Nicole, Sturm, Richard A. and Gabrielli, Brian (2019). Multiple interaction nodes define the post-replication repair response to UV-induced DNA damage that is defective in melanomas and correlated with UV signature mutation load. Molecular Oncology, 14 (1) 1878-0261.12601, 22-41. doi: 10.1002/1878-0261.12601

Endo-Munoz, Liliana, Bennett, Tristram C., Topkas, Eleni, Wu, Sherry Y., Thamm, Douglas H., Brockley, Laura, Cooper, Maureen, Sommerville, Scott, Thomson, Maurine, O'Connell, Kathleen, Lane, Amy, Bird, Guy, Peaston, Anne, Matigian, Nicholas, Straw, Rodney C. and Saunders, Nicholas A. (2019). Auranofin improves overall survival when combined with standard of care in a pilot study involving dogs with osteosarcoma. Veterinary and Comparative Oncology, 18 (2) vco.12533, 206-213. doi: 10.1111/vco.12533

Tomlinson, Ross, Matigian, Nicholas and Mollee, Peter (2019). Validation of the Boston University staging system in AL amyloidosis. Amyloid: Journal of Protein Folding Disorders, 26 (3), 1-3. doi: 10.1080/13506129.2019.1608941

Rehaume, Linda M., Matigian, Nicholas, Mehdi, Ahmed M., Lachner, Nancy, Bowerman, Kate L., Daly, Joshua, Lê Cao, Kim-Anh, Hugenholtz, Philip and Thomas, Ranjeny (2019). IL-23 favours outgrowth of spondyloarthritis-associated pathobionts and suppresses host support for homeostatic microbiota. Annals of the Rheumatic Diseases, 78 (4), 494-503. doi: 10.1136/annrheumdis-2018-214381

D’Arcy, Nicholas, Matigian, Nicholas, Lê Cao, Kim-Anh and Gabrielli, Brian (2018). Pathway dysregulation analysis of the nucleotide excision repair mechanisms reveals it is not a common feature of melanomas. Pigment Cell & Melanoma Research, 32 (2), 336-338. doi: 10.1111/pcmr.12740

Xie, Nan, Matigian, Nicholas, Vithanage, Tharindu D., Gregory, Kye, Nassar, Zeyad D., Cabot, Peter J., Shaw, Paul Nicholas, Kirkpatrick, Carl Mj, Lê Cao, Kim-Anh, Sturgess, David and Parat, Marie-Odile (2018). Effect of perioperative opioids on cancer-relevant circulating parameters: mu opioid receptor and TLR4 activation potential, and proteolytic profile. Clinical Cancer Research, 24 (10), 2319-2327. doi: 10.1158/1078-0432.CCR-18-0172

Premarathne, Susitha, Murtaza, Mariyam, Matigian, Nicholas, Jolly, Lachlan A. and Wood, Stephen A. (2017). Loss of Usp9x disrupts cell adhesion, and components of the Wnt and Notch signaling pathways in neural progenitors. Scientific Reports, 7 (1) 8109, 8109. doi: 10.1038/s41598-017-05451-5

Rohart, Florian, Eslami, Aida, Matigian, Nicholas, Bougeard, Stéphanie and Le Cao, Kim-Anh (2017). MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms. BMC Bioinformatics, 18 (1) 128, 1-13. doi: 10.1186/s12859-017-1553-8

Vitale, Alejandra M., Matigian, Nicholas A., Cristino, Alexandre S., Nones, Katia, Ravishankar, Sugandha, Bellette, Bernadette, Fan, Yongjun, Wood, Stephen A., Wolvetang, Ernst and Mackay-Sim, Alan (2017). DNA methylation in schizophrenia in different patient-derived cell types. Schizophrenia, 3 (1) 6, 1-11. doi: 10.1038/s41537-016-0006-0

Rohart, Florian, Mason, Elizabeth A., Matigian, Nicholas, Mosbergen, Rowland, Korn, Othmar, Chen, Tyrone, Butcher, Suzanne, Patel, Jatin, Atkinson, Kerry, Khosrotehrani, Kiarash, Fisk, Nicholas M., Cao, Kim-Anh Le and Wells, Christine A. (2016). A molecular classification of human mesenchymal stromal cells. PeerJ, 2016 (3) 1845, e1845. doi: 10.7717/peerj.1845

Matigian, Nicholas, Brooke, Gary, Zaibak, Faten, Rossetti, Tony, Kollar, Katarina, Pelekanos, Rebecca, Heazlewood, Celena, Mackay-Sim, Alan, Wells, Christine A and Atkinson, Kerry (2015). Multipotent human stromal cells isolated from cord blood, term placenta and adult bone marrow show distinct differences in gene expression pattern. Genomics Data, 3, 70-74. doi: 10.1016/j.gdata.2014.11.011

Ryan, Jennifer M., Matigian, Nicholas, Pelekanos, Rebecca A., Jesuadian, Samuel, Wells, Christine A. and Fisk, Nicholas M. (2014). Transcriptional ontogeny of first trimester human fetal and placental mesenchymal stem cells: gestational age versus niche. Genomics Data, 2, 382-385. doi: 10.1016/j.gdata.2014.10.016

Stewart, Romal, Kozlov, Sergei, Matigian, Nicholas, Wali, Gautam, Gatei, Magtouf, Sutharsan, Ratneswary, Bellette, Bernadette, Kijas, Amanda Wraith, Cochrane, Julie, Coulthard, Mark, Perry, Chris, Sinclair, Kate, Mackay-Sim, Alan and Lavin, Martin F. (2013). A patient-derived olfactory stem cell disease model for ataxia-telangiectasia. Human Molecular Genetics, 22 (12), 2495-2509. doi: 10.1093/hmg/ddt101

Wells, Christine A., Mosbergen, Rowland, Korn, Othmar, Choi, Jarny, Seidenman, Nick, Matigian, Nicholas A., Vitale, Alejandra M. and Shepherd, Jill (2013). Stemformatics: visualisation and sharing of stem cell gene expression. Stem Cell Research, 10 (3), 387-395. doi: 10.1016/j.scr.2012.12.003

Vitale, Alejandra M., Matigian, Nicholas A., Ravishankar, Sugandha, Bellette, Bernadette, Wood, Stephen A., Wolvetang, Ernst J. and Mackay-Sim, Alan (2012). Variability in the Generation of Induced Pluripotent Stem Cells: Importance for Disease Modeling. Stem Cells Translational Medicine, 1 (9), 641-650. doi: 10.5966/sctm.2012-0043

Mar, Jessica C., Matigian, Nicholas A., Quackenbush, John and Wells, Christine A. (2011). Attract : A method for identifying core pathways that define cellular phenotypes. PLoS One, 6 (10 Article # e25445) e25445, e25445-1-e25445-6. doi: 10.1371/journal.pone.0025445

Mar, Jessica C., Matigian, Nicholas A., Mackay-Sim, Alan, Mellick, George D., Sue, Carolyn M., Silburn, Peter A., McGrath, John J., Quackenbush, John and Wells, Christine A. (2011). Variance of gene expression identifies altered network constraints in neurological disease. PLoS Genetics, 7 (8) e1002207, e1002207. doi: 10.1371/journal.pgen.1002207

Cook, Anthony L., Vitale, Alejandra M., Ravishankar, Sugandah, Matigian, Nicholas, Sutherland, Greg T., Shan, Jiangzou, Sutharsan, Ratneswary, Perry, Chris, Silburn, Peter A., Mellick, George D., Whitelaw, Murray L., Wells, Christine A., Mackay-Sim, Alan and Wood, Stephen A. (2011). NRF2 activation restores disease related metabolic deficiencies in olfactory neurosphere-derived cells from patients with sporadic Parkinson's disease. PLoS One, 6 (7) e21907, e21907.1-e21907.14. doi: 10.1371/journal.pone.0021907

Mason, E, Tronc, G, Nones, K, Matigian, N, Kim, J, Aronow, BJ, Wolfinger, RD, Wells, C and Gibson, G (2010). Maternal influences on the transmission of leukocyte gene expression profiles in population samples from Brisbane, Australia. PLoS ONE, 5 (12) e14479, e14479 -1-e14479-12. doi: 10.1371/journal.pone.0014479

Matigian, N, Abrahamsen, G, Sutharsan, R, Cook, AL, Vitale, AM, Nouwens, A, Bellette, B, An, JY, Anderson, M, Beckhouse, AG, Bennebroek, M, Cecil, R, Chalk, AM, Cochrane, J, Fan, YJ, Feron, F, McCurdy, R, McGrath, JJ, Murrell, W, Perry, C, Raju, J, Ravishankar, S, Silburn, PA, Sutherland, GT, Mahler, S, Mellick, GD, Wood, SA, Sue, CM, Wells, CA and Mackay-Sim, A (2010). Disease-specific, neurosphere-derived cells as models for brain disorders. Disease Models and Mechanisms, 3 (11-12), 785-798. doi: 10.1242/dmm.005447

Suzuki, H, Forrest, ARR, van Nimwegen, E, Daub, CO, Balwierz, PJ, Irvine, KM, Lassmann, T, Ravasi, T, Hasegawa, Y, de Hoon, MJL, Katayama, S, Schroder, K, Carninci, P, Tomaru, Y, Kanamori-Katayama, M, Kubosaki, A, Akalin, A, Ando, Y, Arner, E, Asada, M, Asahara, H, Bailey, T, Bajic, VB, Bauer, D, Beckhouse, AG, Bertin, N, Bjorkegren, J, Brombacher, F, Bulger, E ... Riken Omics Science Center (2009). The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics, 41 (5), 553-562. doi: 10.1038/ng.375

Sutherland, Greg T., Matigian, Nicholas A., Chalk, Alistair M., Anderson, Matthew J., Silburn, Peter A., Mackay-Sim, Alan, Wells, Christine A. and Mellick, George D. (2009). A cross-study transcriptional analysis of Parkinson's disease. PLoS One, 4 (3) e4955, e4944-1-e4944-8. doi: 10.1371/journal.pone.0004955

Helbig, Ingo, Matigian, Nicholas A., Vadlamudi, Lata, Lawrence, Kate M., Bayly, Marta A., Bain, Sharon M., Diyagama, Dileepa, Scheffer, Ingrid E., Mulley, John C., Holloway, Andrew J., Dibbens, Leanne M., Berkovic, Samuel F. and Hayward, Nicholas K. (2008). Gene expression analysis in absence epilepsy using a monozygotic twin design. Epilepsia, 49 (9), 1546-1554. doi: 10.1111/j.1528-1167.2008.01630.x

Matigian, Nicholas A., McCurdy, Richard D., Feron, Francois, Perry, Christopher, Smith, Heather, Filippich, Cheryl, McLean, Duncan, McGrath, John J., Mackay-Sim, Alan, Mowry, Bryan and Hayward, Nicholas K. (2008). Fibroblast and lymphoblast gene expression profiles in schizophrenia: Are non-neural cells informative?. PLoS One, 3 (6) e2412, e2412-1-e2412-5. doi: 10.1371/journal.pone.0002412

Matigian, N., Windus, L., Smith, H., Fillipich, C., Pantelis, C., McGrath, J. J., Mowry, B. and Hayward, N. (2007). Expression profiling in monozygotic twins discordant for bipolar disorder reveals dysregulation of the WNT signaling pathway. Molecular Psychiatry, 12 (9), 815-825. doi: 10.1038/sj.mp.4001998

McRae, A. F., Matigian, N. A., Vadlamudi, L., Mulley, J. C., Mowry, B., Martin, N. G., Berkovic, S. F., Hayward, N. K. and Visscher, P. M. (2007). Replicated effects of sex and genotype on gene expression in human lymphoblastoid cell lines. Human Molecular Genetics, 16 (4), 364-373. doi: 10.1093/hmg/ddl456

McCurdy, Richard D., Feron, Francois, Perry, Chris, Chant, David C., McLean, Duncan, Matigian, Nick, Hayward, Nicholas K., McGrath, John J. and Mackay-Sim, Alan (2006). Cell cycle alterations in biopsied olfactory neuroepithelium in schizophrenia and bipolar I disorder using cell culture and gene expression analyses. Schizophrenia Research, 82 (2-3), 163-173. doi: 10.1016/j.schres.2005.10.012

Khosrotehrani, K., Matigian, N., Baz, B., Legrand, J., Muller, N., Morrison, M. and Walker, G. (2018). Natural history of bacterial composition in skin wounds and its relationship to healing. International Investigative Dermatology (IID) Meeting, Orlando, FL United States, 16-19 May 2018. New York, NY United States: Elsevier.

Tobin, J., Keane, C., Mollee, P., Birch, S., Gould, C., Gunawardana, J., Hoang, T., Savarimuthu, S., Ma, T., Li, L., Murigneux, V. , Fink, L., Matigian, N. and Gandhi, M. K. (2018). The Tumour Microenvironment as an Independent Prognostic Biomarker in Follicular Lymphoma. RACP Congress 2018, Disruption for Healthy Futures, Sydney, NSW Australia, 14–16 May 2018. Hoboken, NJ United States: Wiley. doi: 10.1111/imj.2_13826

Rehaume, Linda, Matigian, Nicholas, Ormerod, Kate, Kang, Alicia, Linedale, Richard, Zbarskaya, Olga, Kikly, Kristine, Daly, Joshua, Lachner, Nancy, Hugenholtz, Philip, Morrison, Mark, Le Cao, Kim-Anh and Thomas, Ranjeny (2017). IL-23 promotes fecal microbiota dysbiosis associated with susceptibility to spondyloarthritis and ileitis in ZAP-70 mutant SKG mice. ACR/ARHP Annual Meeting, San Diego, CA United States, 3-8 November 2017. Hoboken, NJ United States: John Wiley & Sons.

McCurdy, R. D., Feron, F., Perry, C., Chant, D. C., McLean, D., Matigian, N., Hayward, N. K., McGrath, J. J. and Mackay-Sim, A. (2006). Functional and molecular alterations to cell cycle are seen in biopsied olfactory neuroepithelium from patients with schizophrenia and bipolar I disorder. XIIIth Biennial Winter Workshop on Schizophrenia Research, Davos, Switzerland, 4-10 February, 2006. Amsterdam: Elsevier. doi: 10.1016/j.schres.2006.01.006

Mr Nicholas Matigian

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