Honorary Professor John Mattick
Honorary Professor
Institute for Molecular Bioscience
Publications
Book Chapters
Mattick, John S. (2011). RNA networks as digital control circuits of nuclear functions. Genome Organization and Function in the Cell Nucleus. (pp. 353-363) edited by Karsten Rippe. Weinheim, Germany: Wiley-VCH Verlag. doi: 10.1002/9783527639991.ch14
Mattick, J. S. (2006). Noncoding RNA and RNA regulatory networks in the systems biology of animals.. Networks and Models for Systems Biology. (pp. 269-301) edited by Rigoutsis, I. and Stephanopoulos, G.. Oxford: Oxford University Press.
Mattick, J. S. (2003). Noncoding RNAs: a regulatory role?. Nature Encyclopedia of the Human Genome. (pp. 1-10) edited by Cooper and David. UK: Nature Publishing Group, Macmillan Publishers Ltd.. doi: 10.1038/npg.els.0005985
Mattick, J. S. (2003). Introns and noncoding RNAs: The hidden layer of eukaryotic complexity. Noncoding RNAs: Molecular Biology and Molecular Medicine. (pp. 11-32) edited by Barciszewski, J; Erdmann and V A. Georgetown, TX, USA: Landes Bioscience.
Journal Articles
Mladenova, Dessislava, Barry, Guy, Konen, Lyndsey M., Pineda, Sandy S., Guennewig, Boris, Avesson, Lotta, Zinn, Raphael, Schonrock, Nicole, Bitar, Maina, Jonkhout, Nicky, Crumlish, Lauren, Kaczorowski, Dominik C., Gong, Andrew, Pinese, Mark, Franco, Gloria R., Walkley, Carl R., Vissel, Bryce and Mattick, John S. (2018). Adar3 is involved in learning and memory in mice. Frontiers in Neuroscience, 12 (APR) 243, 243. doi: 10.3389/fnins.2018.00243
Deveson, Ira W., Brunck, Marion E., Blackburn, James, Tseng, Elizabeth, Hon, Ting, Clark, Tyson A., Clark, Michael B., Crawford, Joanna, Dinger, Marcel E., Nielsen, Lars K., Mattick, John S. and Mercer, Tim R. (2018). Universal Alternative Splicing of Noncoding Exons. Cell Systems, 6 (2), 245-255. doi: 10.1016/j.cels.2017.12.005
Bartonicek, N., Clark, M. B., Quek, X. C., Torpy, J. R., Pritchard, A. L., Maag, J. L. V., Gloss, B. S., Crawford, J., Taft, R. J., Hayward, N. K., Montgomery, G. W., Mattick, J. S., Mercer, T. R. and Dinger, M. E. (2017). Intergenic disease-associated regions are abundant in novel transcripts. Genome biology, 18 (241) 241, 241. doi: 10.1186/s13059-017-1363-3
Barry, Guy, Briggs, James A., Hwang, Do Won, Nayler, Sam P., Fortuna, Patrick R. J., Jonkhout, Nicky, Dachet, Fabien, Maag, Jesper L. V., Mestdagh, Pieter, Singh, Erin M., Avesson, Lotta, Kaczorowski, Dominik C., Ozturk, Ezgi, Jones, Nigel C., Vetter, Irina, Arriola-Martinez, Luis, Hu, Jianfei, Franco, Gloria R., Warn, Victoria M., Gong, Andrew, Dinger, Marcel E., Rigo, Frank, Lipovich, Leonard, Morris, Margaret J., O'Brien, Terence J., Lee, Dong Soo, Loeb, Jeffrey A., Blackshaw, Seth, Mattick, John S. and Wolvetang, Ernst J. (2017). The long non-coding RNA NEAT1 is responsive to neuronal activity and is associated with hyperexcitability states. Scientific Reports, 7 (1) 40127, 40127. doi: 10.1038/srep40127
Hardwick, Simon A., Chen, Wendy Y., Wong, Ted, Deveson, Ira W., Blackburn, James, Andersen, Stacey B., Nielsen, Lars K., Mattick, John S. and Mercer, Tim R. (2016). Spliced synthetic genes as internal controls in RNA sequencing experiments. Nature Methods, 13 (9), 792-798. doi: 10.1038/nmeth.3958
Deveson, Ira W., Chen, Wendy Y., Wong, Ted, Hardwick, Simon A., Andersen, Stacey B., Nielsen, Lars K., Mattick, John S. and Mercer, Tim R. (2016). Representing genetic variation with synthetic DNA standards. Nature Methods, 13 (9), 784-791. doi: 10.1038/nmeth.3957
Bell, Charles C., Amaral, Paulo P., Kalsbeek, Anton, Magor, Graham W., Gillinder, Kevin R., Tangermann, Pierre, di Lisio, Lorena, Cheetham, Seth W., Gruhl, Franziska, Frith, Jessica, Tallack, Michael R., Ru, Ke-Lin, Crawford, Joanna, Mattick, John S., Dinger, Marcel E. and Perkins, Andrew C. (2016). The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation. Scientific Reports, 6 (1) 26657, 26657. doi: 10.1038/srep26657
Bussotti, Giovanni, Leonardi, Tommaso, Clark, Michael B., Mercer, Tim R., Crawford, Joanna, Malquori, Lorenzo, Notredame, Cedric, Dinger, Marcel E., Mattick, John S. and Enright, Anton J. (2016). Improved definition of the mouse transcriptome via targeted RNA sequencing. Genome Research, 26 (5), 705-716. doi: 10.1101/gr.199760.115
Briggs, James A., Wolvetang, Ernst J., Mattick, John S., Rinn, John L. and Barry, Guy (2015). Mechanisms of long non-coding RNAs in mammalian nervous system development, plasticity, disease, and evolution. Neuron, 88 (5), 861-877. doi: 10.1016/j.neuron.2015.09.045
Clark, Michael B., Mercer, Tim R., Bussotti, Giovanni, Leonardi, Tommaso, Haynes, Katelin R., Crawford, Joanna, Brunck, Marion E., Cao, Kim-Anh Le, Thomas, Gethin P., Chen, Wendy Y., Taft, Ryan J., Nielsen, Lars K., Enright, Anton J., Mattick, John S. and Dinger, Marcel E. (2015). Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing. Nature Methods, 12 (4), 339-342. doi: 10.1038/nmeth.3321
Mercer, Tim R., Clark, Michael B., Anderson, Stacey B., Brunck, Marion E., Haerty, Wilifried, Crawford, Joanna, Taft, Ryan J., Nielsen, Lars K., Dinger, Marcel E. and Mattick, John S. (2015). Genome-wide discovery of human splicing branchpoints. Genome Research, 25 (2), 290-303. doi: 10.1101/gr.182899.114
Spadaro, Paola A., Flavell, Charlotte R., Widagdo, Jocelyn, Ratnu, Vikram S., Troup, Michael, Ragan, Chikako, Mattick, John S. and Bredy, Timothy W. (2015). Long noncoding RNA-directed epigenetic regulation of gene expression is associated with anxiety-like behavior in mice. Biological Psychiatry, 78 (12), 848-859. doi: 10.1016/j.biopsych.2015.02.004
Cossetti, Chiara, Iraci, Nunzio, Mercer, Tim R., Leonardi, Tommaso, Alpi, Emanuele, Drago, Denise, Alfaro-Cervello, Clara, Siani, Harpreet K., Davis, Matthew P., Schaeffer, Julia, Vega, Beatriz, Stefanini, Matilde, Zhao, CongJian, Muller, Werner, Garcia-Verdugo, Jose Manuel, Mathivanan, Suresh, Bachi, Angela, Enright, Anton J., Mattick, John S. and Pluchino, Stefano (2014). Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells. Molecular Cell, 56 (2), 193-204. doi: 10.1016/j.molcel.2014.08.020
Mercer, Tim R., Clark, Michael B., Crawford, Joanna, Brunck, Marion E., Gerhardt, Daniel J., Taft, Ryan J., Nielsen, Lars K., Dinger, Marcel E. and Mattick, John S. (2014). Targeted sequencing for gene discovery and quantification using RNA CaptureSeq. Nature Protocols, 9 (5), 989-1009. doi: 10.1038/nprot.2014.058
Li, Jian-Liang, Mazar, Joseph, Zhong, Cuncong, Faulkner, Geoffrey J., Govindarajan, Subramaniam S., Zhang, Zhan, Dinger, Marcel E., Meredith, Gavin, Adams, Christopher, Zhang, Shaojie, Mattick, John S., Ray, Animesh and Perera, Ranjan J. (2013). Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network. Scientific Reports, 3 (1) 2962, 02962.1-02962.12. doi: 10.1038/srep02962
Smith, Martin A., Gesell, Tanja, Stadler, Peter F. and Mattick, John S. (2013). Widespread purifying selection on RNA structure in mammals. Nucleic Acids Research, 41 (17), 8220-8236. doi: 10.1093/nar/gkt596
Buske, Fabian A., Bauer, Denis C., Mattick, John S. and Bailey, Timothy L. (2013). Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci. Bioinformatics, 29 (15), 1895-1897. doi: 10.1093/bioinformatics/btt315
Mercer, Tim R., Edwards, Stacey L., Clark, Michael B., Neph, Shane J., Wang, Hao, Stergachis, Andrew B., John, Sam, Sandstrom, Richard, Li, Guoliang, Sandhu, Kuljeet S., Ruan, Yijun, Nielsen, Lars K., Mattick, John S. and Stamatoyannopoulos, John A. (2013). DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements. Nature Genetics, 45 (8), 852-859. doi: 10.1038/ng.2677
Liu, Ganqiang, Mattick, John S. and Taft, Ryan (2013). A meta-analysis of the genomic and transcriptomic composition of complex life. Cell Cycle, 12 (13), 2061-2072. doi: 10.4161/cc.25134
Rakoczy, Joanna, Fernandez-Valverde, Selene L., Glazov, Evgeny A., Wainwright, Elanor N., Sato, Tempei, Takada, Shuji, Combes, Alexander N., Korbie, Darren J., Miller, David, Grimmond, Sean M., Little, Melissa H., Asahara, Hiroshi, Mattick, John S., Taft, Ryan J. and Wilhelm, Dagmar (2013). MicroRNAs-140-5p/140-3p modulate leydig cell numbers in the developing mouse testis. Biology of Reproduction, 88 (6) 143, 143. doi: 10.1095/biolreprod.113.107607
Mercer, Tim R. and Mattick, John S. (2013). Structure and function of long noncoding RNAs in epigenetic regulation. Nature Structural & Molecular Biology, 20 (3), 300-307. doi: 10.1038/nsmb.2480
Cattenoz, Pierre B., Taft, Ryan J., Westhof, Eric and Mattick, John S. (2013). Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage. RNA, 19 (2), 257-270. doi: 10.1261/rna.036202.112
Clark, Michael, Choudhary, Anupma, Smith, Martin Alexander, Taft, Ryan and Mattick, John S. (2013). The dark matter rises: the expanding world of regulatory RNAs. Essays in Biochemistry, 54 (1), 1-16. doi: 10.1042/BSE0540001
Liu, Ganqiang, Mercer, Timothy R., Shearwood, Anne-Marie J., Siira, Stefan J., Hibbs, Moira E., Mattick, John S., Rackham, Oliver and Filipovska, Aleksandra (2013). Mapping of mitochondrial RNA-protein interactions by digital RNase footprinting. Cell Reports, 5 (3), 839-848. doi: 10.1016/j.celrep.2013.09.036
Marcellin, Esteban, Mercer, Tim R., Licona-Cassani, Cuauhtemoc, Palfreyman, Robin W., Dinger, Marcel E., Steen, Jennifer A., Mattick, John S. and Nielsen, Lars K. (2013). Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch. BMC Genomics, 14 (1) 15, 15.1-15.9. doi: 10.1186/1471-2164-14-15
Barry, Guy, Briggs, J. A., Vanichkina, D. P., Poth, E. M., Beveridge, N. J., Vikram Ratnu, Nayler, S. P., Nones, K., Hu, J., Timothy Bredy, Nakagawa, S., Rigo, F., Taft, R. J., Cairns, M. J., Blackshaw, S., Wolvetang, E. J. and Mattick, J. S. (2013). The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. Molecular Psychiatry, 19 (4), 486-494. doi: 10.1038/mp.2013.45
Plummer, Prue N., Freeman, Ruth, Taft, Ryan, Vider, Jelena, Sax, Michael, Umer, Brittany, Gao, Dingcheng, Johns, Christopher A., Mattick, John S., Wilton, Stephen D., Ferro, Vito, McMillan, Nigel A, Swarbrick, Alex, Mittal, Vivek and Mellick, Albert S. (2013). MicroRNAs regulate tumor angiogenesis modulated by endothelial progenitor cells. Cancer Research, 73 (1), 341-352. doi: 10.1158/0008-5472.CAN-12-0271
Nolan, Laura M., Beatson, Scott A., Croft, Larry, Jones, Peter M., George, Anthony M., Mattick, John S., Turnbull, Lynne and Whitchurch, Cynthia B. (2012). Extragenic suppressor mutations that restore twitching motility to fimL mutants of Pseudomonas aeruginosa are associated with elevated intracellular cyclic AMP levels. MicrobiologyOpen, 1 (4), 490-501. doi: 10.1002/mbo3.49
Gascoigne, Dennis K., Cheetham, Seth W., Cattenoz, Pierre B., Clark, Michael B., Amaral, Paulo P., Taft, Ryan J., Wilhelm, Dagmar, Dinger, Marcel E. and Mattick, John S. (2012). Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes. Bioinformatics, 28 (23), 3042-3050. doi: 10.1093/bioinformatics/bts582
Barry, Guy and Mattick, John S. (2012). The role of regulatory RNA in cognitive evolution. Trends In Cognitive Sciences, 16 (10), 497-503. doi: 10.1016/j.tics.2012.08.007
Pineda, Sandy Steffany, Wilson, David, Mattick, John S. and King, Glenn F. (2012). The lethal toxin from Australian funnel-web spiders is encoded by an intronless gene. PLoS One, 7 (8) e43699, E43699.1-E43699.8. doi: 10.1371/journal.pone.0043699
Buske, Fabian A., Bauer, Denis C., Mattick, John S. and Bailey, Timothy L. (2012). Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data. Genome Research, 22 (7), 1372-1381. doi: 10.1101/gr.130237.111
Smart, Chanel E., Askarian Amiri, Marjan E., Wronski, Ania, Dinger, Marcel E., Crawford, Joanna, Ovchinnikov, Dmitry A., Vargas, Ana Cristina, Reid, Lynne, Simpson, Peter T., Song, Sarah, Wiesner, Christiane, French, Juliet D., Dave, Richa K., da Silva, Leonard, Purdon, Amy, Andrew, Megan, Mattick, John S., Lakhani, Sunil R., Brown, Melissa A. and Kellie, Stuart (2012). Expression and function of the protein tyrosine phosphatase receptor J (PTPRJ) in normal mammary epithelial cells and breast tumors. PLoS One, 7 (7) e40742, e40742.1-e40742.13. doi: 10.1371/journal.pone.0040742
Clark, Michael B., Johnston, Rebecca L., Inostroza-Ponta, Mario, Fox, Archa H., Fortini, Ellen, Moscato, Pablo, Dinger, Marcel E. and Mattick, John S. (2012). Genome-wide analysis of long noncoding RNA stability. Genome Research, 22 (5), 885-898. doi: 10.1101/gr.131037.111
Mattick, John S. (2012). RNA driving the epigenetic bus. Embo Journal, 31 (3), 515-516. doi: 10.1038/emboj.2011.479
Mercer, Tim R., Gerhardt, Daniel J., Dinger, Marcel E., Crawford, Joanna, Trapnell, Cole, Jeddeloh, Jeffrey A., Mattick, John S. and Rinn, John L. (2012). Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Nature Biotechnology, 30 (1), 99-104. doi: 10.1038/nbt.2024
Rackham, Oliver, Shearwood, Anne-Marie J., Mercer, Tim R., Davies, Stefan M. K., Mattick, John S. and Filipovska, Aleksandra (2011). Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins. RNA, 17 (12), 2085-2093. doi: 10.1261/rna.029405.111
Mattick, John S. (2011). The double life of RNA. Biochimie, 93 (11), VIII-IX. doi: 10.1016/S0300-9084(11)00341-5
Dinger, Marcel E., Gascoigne, Dennis K. and Mattick, John S. (2011). The evolution of RNAs with multiple functions. Biochimie, 93 (11), 2013-2018. doi: 10.1016/j.biochi.2011.07.018
Baillie, J. Kenneth, Barnett, Mark W., Upton, Kyle R., Gerhardt, Daniel J., Richmond, Todd A., De Sapio, Fioravante, Brennan. Paul M., Rizzu, Patrizia, Smith, Sarah, Fell, Mark, Talbot, Richard T., Gustincich, Stefano, Freeman, Thomas C., Mattick, John S., Hume, David A., Heutink, Peter, Carninci, Piero, Jeddeloh, Jeffrey A. and Faulkner, Geoffrey J. (2011). Somatic retrotransposition alters the genetic landscape of the human brain. Nature, 479 (7374), 534-537. doi: 10.1038/nature10531
Mattick, John S. and Clark, Michael B. (2011). RNA lights up. Nature Biotechnology, 29 (10), 883-884. doi: 10.1038/nbt.2003
Thiagarajan, Rathi D., Cloonan, Nicole, Gardiner, Brooke B., Mercer, Tim R., Kolle, Gabriel, Nourbaksh, Ehsan, Wani, Shivangi, Tang, Dave, Krishnan, Keerthana, Georgas, Kylie M., Rumballe, Bree A., Chiu, Han S., Steen, Jason A., Mattick, John S., Little, Melissa H. and Grimmond, Sean M. (2011). Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling. BMC Genomics, 12 (1) 441, 441-1-441-16. doi: 10.1186/1471-2164-12-441
Lopez Sanchez, Maria I. G., Mercer, Tim R., Davies, Stefan M. K., Shearwood, Anne-Marie J., Nygard, Karoline K. A., Richman, Tara R., Mattick, John S., Rackham, Oliver and Filipovska, Aleksandra (2011). RNA processing in human mitochondria. Cell Cycle, 10 (17), 2904-2916. doi: 10.4161/cc.10.17.17060
Taft, Ryan J., Hawkins, Peter G., Mattick, John S. and Morris, Kevin V. (2011). The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization. Epigenetics and Chromatin, 4 (13) 13, 1-13. doi: 10.1186/1756-8935-4-13
Mercer, Tim R., Neph, Shane, Dinger, Marcel E., Crawford, Joanna, Smith, Martin A., Shearwood, Anne-Marie J., Haugen, Eric, Bracken, Cameron P., Rackham, Oliver, Stamatoyannopoulos, John A., Filipovska, Aleksandra and Mattick, John S. (2011). The human mitochondrial transcriptome. Cell, 146 (4), 645-658. doi: 10.1016/j.cell.2011.06.051
Faunes, Fernando, Sanchez, Natalia, Moreno, Mauricio, Olivares, Gonzalo H., Lee-Liu, Dasfne, Almonacid, Leonardo, Slater, Alex W., Norambuena, Tomas, Taft, Ryan J., Mattick, John S., Melo, Francisco and Larrain, Juan (2011). Expression of transposable elements in neural tissues during Xenopus development. PLoS One, 6 (7) e22569, e22569.1-e22569.11. doi: 10.1371/journal.pone.0022569
Fernandez Valverde, Selene L., Taft, Ryan J. and Mattick, John S. (2011). MicroRNAs in β-cell biology, insulin resistance, diabetes and its complications. Diabetes, 60 (7), 1825-1831. doi: 10.2337/db11-0171
Bracken, Cameron P., Szubert, Jan M., Mercer, Tim R., Dinger, Marcel E., Thomson, Daniel W., Mattick, John S., Michael, Michael Z. and Goodall, Gregory J. (2011). Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage. Nucleic Acids Research, 39 (13), 5658-5668. doi: 10.1093/nar/gkr110
Bredy, Timothy W., Lin, Quan, Wei, Wei, Baker-Andresen, Danay and Mattick, John S. (2011). MicroRNA regulation of neural plasticity and memory. Neurobiology of Learning and Memory, 96 (1), 89-94. doi: 10.1016/j.nlm.2011.04.004
Clark, Michael B., Amaral, Paulo P., Schlesinger, Felix J., Dinger, Marcel E., Taft, Ryan J., Rinn, John L., Ponting, Chris P., Stadler, Peter F., Morris, Kevin V., Morillon, Antonin, Rozowsky, Joel S., Gerstein, Mark B., Wahlestedt, Claes, Hayashizaki, Yoshihide, Carninci, Piero, Gingeras, Thomas R. and Mattick, John S. (2011). The reality of pervasive transcription. PLoS Biology, 9 (7) e1000625, e1000625.1-e1000625.6. doi: 10.1371/journal.pbio.1000625
Mattick, John S. (2011). The central role of RNA in human development and cognition. FEBS Letters, 585 (11), 1600-1616. doi: 10.1016/j.febslet.2011.05.001
Mattick, John S. (2011). Long noncoding RNAs in cell and developmental biology. Seminars in Cell and Developmental Biology, 22 (4), 327-327. doi: 10.1016/j.semcdb.2011.05.002
Khaitan, Divya, Dinger, Marcel E., Mazar, Joseph, Crawford, Joanna, Smith, Martin A., Mattick, John S. and Perera, Ranjan J. (2011). The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion. Cancer Research, 71 (11), 3852-3862. doi: 10.1158/0008-5472.CAN-10-4460
Clark, Michael B. and Mattick, John S. (2011). Long noncoding RNAs in cell biology. Seminars in Cell and Developmental Biology, 22 (4), 366-376. doi: 10.1016/j.semcdb.2011.01.001
Buske, Fabian A., Mattick, John S. and Bailey, Timothy L. (2011). Potential in vivo roles of nucleic acid triple-helices. RNA Biology, 8 (3), 427-439. doi: 10.4161/rna.8.3.14999
Askarian-Amiri, Marjan E., Crawford, Joanna, French, Juliet D., Smart, Chanel E., Smith, Martin A., Clark, Michael B., Ru, Kelin, Mercer, Tim R., Thompson, Ella R., Lakhani, Sunil R., Vargas, Ana C., Campbell, Ian G., Brown, Melissa A., Dinger, Marcel E. and Mattick, John S. (2011). SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. RNA, 17 (5), 878-891. doi: 10.1261/rna.2528811
Wong, Chui E., Zhao, Ying-Tao, Wang, Xiu-Jie, Croft, Larry, Wang, Zhong-Hua, Haerizadeh, Farzad, Mattick, John S., Singh, Mohan B., Carroll, Bernard J. and Bhalla, Prem L. (2011). MicroRNAs in the shoot apical meristem of soybean. Journal of Experimental Botany, 62 (8), 2495-2506. doi: 10.1093/jxb/erq437
Mattick, John S. (2011). The genomic foundation is shifting. Science, 331 (6019), 874-874. doi: 10.1126/science.1203703
Amaral, Paulo P., Clark, Michael B., Gascoigne, Dennis K., Dinger, Marcel E. and Mattick, John S. (2011). LncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research, 39 (Supplement 1), D146-D151. doi: 10.1093/nar/gkq1138
Mercer, Tim R., Wilhelm, Dagmar, Dinger, Marcel E., Solda, Giulia, Korbie, Darren J., Glazov, Evgeny A., Truong, Vy, Schwenke, Maren, Simons, Cas, Matthaei, Klaus I., Saint, Robert, Koopman, Peter and Mattick, John S. (2011). Expression of distinct RNAs from 3′ untranslated regions. Nucleic Acids Research, 39 (6), 2393-2403. doi: 10.1093/nar/gkq1158
Mercer, Tim R., Dinger, Marcel E., Bracken, Cameron P., Kolle, Gabriel, Szubert, Jan M., Korbie, Darren J., Askarian-Amiri, Marjan E., Gardiner, Brooke B., Goodall, Gregory J., Grimmond, Sean M. and Mattick, John S. (2010). Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome. Genome Research, 20 (12), 1639-1650. doi: 10.1101/gr.112128.110
Mattick, John S. (2010). The central role of RNA in the genetic programming of complex organisms. Anais da Academia Brasileira de Ciencias, 82 (4), 933-939. doi: 10.1590/S0001-37652010000400016
Mattick, John S. (2010). Linc-ing long noncoding RNAs and enhancer function. Developmental Cell, 19 (4), 485-486. doi: 10.1016/j.devcel.2010.10.003
Fernandez-Valverde, Selene L., Taft, Ryan J. and Mattick, John S. (2010). Dynamic isomiR regulation in Drosophila development. RNA, 16 (10), 1881-1888. doi: 10.1261/rna.2379610
Aung, Hnin T., Harrison, Dion K., Findlay, Ian, Mattick, John S., Martin, Nicholas G. and Carroll, Bernard J. (2010). Stringent programming of DNA methylation in humans. Twin Research and Human Genetics, 13 (5), 405-411. doi: 10.1375/twin.13.5.405
Jung, Chol-Hee, Makunin, Igor V. and Mattick, John S. (2010). Identification of conserved Drosophila-specific euchromatin-restricted non-coding sequence motifs. Genomics, 96 (3), 154-166. doi: 10.1016/j.ygeno.2010.05.006
Taft, Ryan, Simons, Cas, Nahkuri, Satu, Oey, Harald, Korbie, Darren J., Mercer, Timothy R., Holst, Jeff, Ritchie, William, Wong, Justin J-L., Rasko, John E. J., Rokhsar, Daniel S., Degnan, Bernard M. and Mattick, John S. (2010). Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nature Structural and Molecular Biology, 17 (8), 1030-1035. doi: 10.1038/nsmb.1841
Mattick, John (2010). Video Q&A: Non-coding RNAs and eukaryotic evolution - a personal view. BMC Biology, 8 (Article # 67) 67, 67-1-67-2. doi: 10.1186/1741-7007-8-67
Mazar, Joseph, Sinha, Satyabrata, Dinger, Marcel E., Mattick, John S. and Perera, Ranjan J. (2010). Protein-coding and non-coding gene expression analysis in differentiating human keratinocytes using a three-dimensional epidermal equivalent. Molecular Genetics and Genomics, 284 (1), 1-9. doi: 10.1007/s00438-010-0543-6
Mattick, John S. (2010). RNA as the substrate for epigenome-environment interactions: RNA guidance of epigenetic processes and the expansion of RNA editing in animals underpins development, phenotypic plasticity, learning, and cognition. Bioessays, 32 (7), 548-552. doi: 10.1002/bies.201000028
Qureshi, Irfan A., Mattick, John S. and Mehler, Mark F. (2010). Long non-coding RNAs in nervous system function and disease. Brain Research, 1338 (5), 20-35. doi: 10.1016/j.brainres.2010.03.110
Lai, John, Lehman, Melanie L., Dinger, Marcel E., Hendy, Stephen C., Mercer, Tim R., Seim, Inge, Lawrence, Mitchell G., Mattick, John S., Clements, Judith A. and Nelson, Colleen C. (2010). A variant of the KLK4 gene is expressed as a cis sense-antisense chimeric transcript in prostate cancer cells. RNA, 16 (6), 1156-1166. doi: 10.1261/rna.2019810
Oldmeadow, Christopher, Mengersen, Kerrie, Mattick, John S. and Keith, Jonathan M. (2010). Multiple evolutionary rate classes in animal genome evolution. Molecular Biology and Evolution, 27 (4), 942-953. doi: 10.1093/molbev/msp299
de Hoon, Michiel J. L., Taft, Ryan J., Hashimoto, Takehiro, Kanamori-Katayama, Mutsumi, Kawaji, Hideya, Kawano, Mitsuoki, Kishima, Mami, Lassmann, Timo, Faulkner, Geoffrey J., Mattick, John S., Daub, Carsten O., Carninci, Piero, Kawai, Jun, Suzuki, Harukazu and Hayashizaki, Yoshihide (2010). Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Research, 20 (2), 257-264. doi: 10.1101/gr.095273.109
Jung, Chol-Hee, Hansen, Martin A., Makunin, Igor V., Korbie, Darren J. and Mattick, John S. (2010). Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data. BMC Genomics, 11 (1 Article # 77) 77, 1-12. doi: 10.1186/1471-2164-11-77
Mercer, Tim R., Qureshi, Irfan A., Gokhan, Solen, Dinger, Marcel E., Li, Guangyu, Mattick, John S. and Mehler, Mark F. (2010). Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation. BMC Neuroscience, 11 (1) 14, 1-15. doi: 10.1186/1471-2202-11-14
Mattick, John S., Taft, Ryan J. and Faulkner, Geoffrey J. (2010). A global view of genomic information - moving beyond the gene and the master regulator. Trends in Genetics, 26 (1), 21-28. doi: 10.1016/j.tig.2009.11.002
Amaral, Paulo P., Neyt, Christine, Wilkins, Simon J., Askarian-Amiri, Marjan E., Sunkin, Susan M., Perkins, Andrew C. and Mattick, John S. (2009). Complex architecture and regulated expression of the Sox2ot locus during vertebrate development. RNA, 15 (11), 2013-2027. doi: 10.1261/rna.1705309
Dinger, M. E., Amaral, P. A., Mercer, T. R. and Mattick, J. S. (2009). Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications. Briefings in Functional Genomics and Proteomics, 8 (6) elp038, 407-423. doi: 10.1093/bfgp/elp038
Taft, R. J., Pang, K. C., Mercer, T. R., Dinger, M and Mattick, J. S. (2009). Non-coding RNAs: regulators of disease. Journal of Pathology, 220 (2), 126-139. doi: 10.1002/path.2638
Nahkuri, S, Taft, R. J. and Mattick, J. S. (2009). Nucleosomes are preferentially positioned at exons in somatic and sperm cells. Cell Cycle, 8 (20), 3420-3424. doi: 10.4161/cc.8.20.9916
Taft, R. J., Kaplan, C. D., Simons, C and Mattick, J. S. (2009). Evolution, biogenesis and function of promoter-associated RNAs. Cell Cycle, 8 (15), 2332-2338. doi: 10.4161/cc.8.15.9154
Taft, Ryan J., Glazov, Evgeny A., Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero and Mattick, John S. (2009). Small RNAs derived from snoRNAs. RNA, 15 (7), 1233-1240. doi: 10.1261/rna.1528909
Mattick, J. S (2009). Has evolution learnt how to learn?. EMBO Reports, 10 (7), 665-665. doi: 10.1038/embor.2009.135
Pang, K. C., Dinger, M. E., Mercer, T. R., Malquori, L, Grimmond, S. M., Chen, W. S. and Mattick, J. S. (2009). Genome-wide identification of long noncoding RNAs in CD8(+) T cells. Journal of Immunology, 182 (12), 7738-7748. doi: 10.4049/jimmunol.0900603
Taft, RJ, Glazov, EA, Cloonan, N, Simons, C, Stephen, S, Faulkner, GJ, Lassmann, T, Forrest, ARR, Grimmond, SM, Schroder, K, Irvine, K, Arakawa, T, Nakamura, M, Kubosaki, A, Hayashida, K, Kawazu, C, Murata, M, Nishiyori, H, Fukuda, S, Kawai, J, Daub, CO, Hume, DA, Suzuki, H, Orlando, V, Carninci, P, Hayashizaki, Y and Mattick, JS (2009). Tiny RNAs associated with transcription start sites in animals. Nature Genetics, 41 (5), 572-578. doi: 10.1038/ng.312
Suzuki, H, Forrest, ARR, van Nimwegen, E, Daub, CO, Balwierz, PJ, Irvine, KM, Lassmann, T, Ravasi, T, Hasegawa, Y, de Hoon, MJL, Katayama, S, Schroder, K, Carninci, P, Tomaru, Y, Kanamori-Katayama, M, Kubosaki, A, Akalin, A, Ando, Y, Arner, E, Asada, M, Asahara, H, Bailey, T, Bajic, VB, Bauer, D, Beckhouse, AG, Bertin, N, Bjorkegren, J, Brombacher, F, Bulger, E ... Riken Omics Science Center (2009). The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics, 41 (5), 553-562. doi: 10.1038/ng.375
Mattick, J. S (2009). The genetic signatures of noncoding RNAs. PLoS Genetics, 5 (4), e1000459-x. doi: 10.1371/journal.pgen.1000459
Guffanti, Alessandro, Iacono, Michele, Pelucchi, Paride, Kim, Namshin, Solda, Giulia, Croft, Larry J., Taft, Ryan J., Rizzi, Ermanno, Askarian-Amiri, Marjan, Bonnal, Raoul J., Callari, Maurizio, Mignone, Flavio, Pesole, Graziano, Bertalot, Giovanni, Bernardi, Luigi Rossi, Albertini, Alberto, Lee, Christopher, Mattick, John S., Zucchi, Ileana and De Bellis, Gianluca (2009). A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Genomics, 10 (1) 163, 163.1-163.17. doi: 10.1186/1471-2164-10-163
Mercer, T. R., Dinger, M. E. and Mattick, J. S. (2009). Long non-coding RNAs: insights into functions. Nature Reviews Genetics, 10 (3), 155-159. doi: 10.1038/nrg2521
Webster, Rebecca J., Giles, Keith M., Price, Karina J., Zhang, Priscilla M., Mattick, John S. and Leedman, Peter J. (2009). Regulation of epidermal growth factor receptor signaling in human cancer cells by microRNA-7. Journal of Biological Chemistry, 284 (9), 5731-5741. doi: 10.1074/jbc.M804280200
Dinger, M. E., Pang, K. C., Mercer, T. R., Crowe, M. L., Grimmond, S. M. and Mattick, J. S. (2009). NRED: a database of long noncoding RNA expression. Nucleic Acids Research, 37 (SUPPL. 1), D122-D126. doi: 10.1093/nar/gkn617
Sunwoo, H., Dinger, M. E., Wilusz, J. E., Amaral, P. P., Mattick, J. S. and Spector, D. L. (2009). MEN / nuclear retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Research, 19 (3), 347-359. doi: 10.1101/gr.087775.108
Mattick, J. S, Amaral, P. P., Dinger, M. E., Mercer, T. R. and Mehler, M. F. (2009). RNA regulation of epigenetic processes. BioEssays, 31 (1), 51-59. doi: 10.1002/bies.080099
Stephen, S., Pheasant, M., Makunin, I. V. and Mattick, J. S. (2008). Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock. Molecular Biology and evolution, 25 (2), 402-408. doi: 10.1093/molbev/msm268
Dinger, Marcel E., Pang, Ken C., Mercer, Tim R. and Mattick, John S. (2008). Differentiating protein-coding and noncoding RNA: Challenges and ambiguities. PLoS Computational Biology, 4 (11) e1000176, e1000176.1-e1000176.5. doi: 10.1371/journal.pcbi.1000176
Mercer, T. R., Dinger, M. E., Mariani J., Kosik, K . S., Mehler, M. F. and Mattick, J. S. (2008). Noncoding RNAs in long term memory formation. Neuroscientist, 14 (5), 434-445. doi: 10.1177/1073858408319187
Keith, J. M., Adams, P., Stephen, S. and Mattick, J. S. (2008). Delineating slowly and rapidly evolving fractions of the Drosophila genome. Journal of Computational Biology, 15 (4), 407-430. doi: 10.1089/cmb.2007.0173
Dinger, Marcel E., Amaral, Paulo P., Mercer, Tim R, Pang, Ken C., Bruce, Stephen J., Gardiner, Brooke B., Askarian-Amiri, Marjan E., Ru, Kelin, Solda, Giulia, Simons, Cas, Sunkin, Susan M., Crowe, Mark L., Grimmond, Sean M, Perkins, Andrew C. and Mattick, John S. (2008). Long Noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Research, 18 (9), 1433-1445. doi: 10.1101/gr.078378.108
Korbie, D. J. and Mattick, J. S. (2008). Touchdown PCR for increased specificity and sensitivity in PCR amplification. Nature Protocols, 3 (9), 1452-1456. doi: 10.1038/nprot.2008.133
Amaral, Paulo, Dinger, Marcel, Mattick, John, Mehler, Mark and Mercer, Tim (2008). RNA control of epigenetic processes. Australian Biochemist, 39 (2), 4-8.
Nahkuri, S., Taft, R. J., Korbie, D. J. and Mattick, J. S. (2008). Molecular evolution of the HBII-52 snoRNA Cluster. Journal of Molecular Biology, 381 (4), 810-815. doi: 10.1016/j.jmb.2008.06.057
Amaral, P. P., Dinger, M. E., Mercer, T. R. and Mattick, J. S. (2008). The Eukaryotic genome as an RNA machine. Science, 319 (5871), 1787-1789. doi: 10.1126/science.1155472
Amaral, P. P. and Mattick, J. S. (2008). Noncoding RNA in development. Mammalian Genome, 19 (7-8), 454-492. doi: 10.1007/s00335-008-9136-7
Mattick, J. S. and Mehler, M. F. (2008). RNA editing, DNA recoding and the evolution of human cognition. Trends in Neurosciences, 31 (5), 227-233. doi: 10.1016/j.tins.2008.02.003
Dinger, M. E., Mercer, T. R. and Mattick, J. S. (2008). RNAs as extracellular signaling molecules. Journal Of Molecular Endocrinology, 40 (4), 151-159. doi: 10.1677/JME-07-0160
Mercer, T. R., Dinger, M. E., Sunkin, S. M., Mehler, M. F. and Mattick, J. S. (2008). Specific expression of long noncoding RNAs in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America, 105 (2), 716-721. doi: 10.1073/pnas.0706729105
Mattick, John S. (2008). Ein neues Verständnis des humanen Genoms = A new understanding of the human genome. Lab&More, 2, 6-8.
Frith, M. C., Carninci, P., Kai, C., Kawai, J., Bailey, T. L., Hayashizaki, Y. and Mattick, J. S. (2007). Splicing bypasses 3' end formation signals to allow complex gene architectures. Gene, 403 (1-2), 188-193. doi: 10.1016/j.gene.2007.08.012
Makunin, Igor, Pheasant, Michael, Simons, Cas and Mattick, John S. (2007). Orthologous MicroRNA genes are located in cancer-associated genomic regions in human and mouse. PLoS One, 2 (11) e1133, e1133. doi: 10.1371/journal.pone.0001133
Mattick, John S. (2007). A new paradigm for developmental biology. The Journal of Experimental Biology, 210 (9), 1526-1547. doi: 10.1242/jeb.005017
Taft, Ryan J, Pheasant, Michael and Mattick, John S. (2007). The relationship between non-protein-coding DNA and eukaryotic complexity. BioEssays, 29 (3), 288-299. doi: 10.1002/bies.20544
Simons, Cas, Makunin, Igor V., Pheasant, Michael and Mattick, John S. (2007). Maintenance of transposon-free regions throughout vertebrate evolution. BMC Genomics, 8 (1) 470, 470-479. doi: 10.1186/1471-2164-8-470
Pheasant, M. and Mattick, J. S. (2007). Raising the estimate of functional human sequences. Genome Research, 17 (9), 1245-1253. doi: 10.1101/gr.6406307
Pang, K. C., Stephen, S., Dinger, M. E., Engstrom, P. G., Lenhard, B. and Mattick, J.S. (2007). RNAdb 2.0-an expanded database of mammalian non-coding RNAs. Nucleic Acids Research, 35 (SUPPL. 1), D178-D182. doi: 10.1093/nar/gkl926
Mattick, John S. (2007). The Human Genome as an RNA Machine. The Scientist, 21 (10), 61-63.
Mattick, J. S. and The ENCODE Project Consortium (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447 (7146), 799-816. doi: 10.1038/nature05874
Mehler, Mark F. and Mattick, John S. (2007). Noncoding RNAs and RNA editing in brain development, functional diversification and neurological disease. Physiological Reviews, 87 (3), 799-823. doi: 10.1152/physrev.00036.2006
Mattick, JS (2007). The majority of the human genome encodes a hidden RNA regulatory system that controls differentiation and development. Hypertension, 49 (6), 1472-1472.
Leech, Andrew J. and Mattick, John S. (2006). Effect of site-specific mutations in different phosphotransfer domains of the chemosensory protein ChpA on Pseudomonas aeruginosa motility. Journal of Bacteriology, 188 (24), 8479-8486. doi: 10.1128/JB.00157-06
Mattick, John S. and Makunin, Igor V. (2006). Non-coding RNA. Human Molecular Genetics, 15 (suppl 1), R17-R29. doi: 10.1093/hmg/ddl046
Frith, M. C., Bailey, T. L., Kasukawa, T., Mignone, F., Kummerfeld, S. K., Medera, M., Sunkara, S., Furuno, M., Bult, C. J., Quackenbush, J., Kai, C., Kawai, J., Carninci, P., Hayashizaki, Y, Pesole, G. and Mattick, J. S. (2006). Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA. RNA Biology, 3 (1), 40-48. doi: 10.4161/rna.3.1.2789
Simons, Cas, Pheasant, Michael, Makunin, Igor V. and Mattick, John S. (2006). Transposon-free regions in mammalian genomes. Genome Research, 16 (2), 164-172. doi: 10.1101/gr4624306
Ravasi, T., Suzuki, H., Pang, K. C., Katayama, S., Furuno, M., Okunishi, R., Fukuda, S., Ru, K., Frith, M., Gongora, M., Grimmond, S., Hume, D. A., Hayashizaki, Y. and Mattick, J. S. (2006). Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Research, 16 (1), 11-19. doi: 10.1101/gr.4200206
Kenzelmann, Marc, Rippe, Karsten and Mattick, John S. (2006). RNA: Networks & imaging. Molecular Systems Biology, 2 (Article 44) 44, 1-7. doi: 10.1038/msb4100086
Stanley, Stefan M., Bailey, Timothy L. and Mattick, John S. (2006). GONOME: measuring correlations between GO terms and genomic positions. BMC Bioinformatics, 7 (94) 94, 1-11. doi: 10.1186/1471-2105-7-94
Furuno, Masaaki, Pang, Ken C., Ninomiya, Noriko, Fukuda, Shiro, Frith, Martin C., Bult, Carol, Kai, Chikatoshi, Kawai, Jun, Carninci, P., Hayashizaki, Yoshihide, Mattick, John S. and Suzuki, Harukazu (2006). Clusters of internally primed transcripts reveal novel long noncoding RNAs. Plos Genetics, 2 (4) e37, 537-553. doi: 10.1371/journal.pgen.0020037
Mattick, John S. (2006). The underworld of RNA. Nature Genetics, 38 (4), 393-393. doi: 10.1038/ng0406-1
Glazov, A., Pheasant, M., Nahkuri, S. and Mattick, J. S. (2006). Evidence for control of splicing by alternative RNA secondary structures in Dipteran homothorax pre-mRNA. RNA Biology, 3 (1), 36-39. doi: 10.4161/rna.3.1.2719
Mehler, M. F. and Mattick, J. S. (2006). Non-coding RNAs in the nervous system. Journal of Physiology-london, 575 (2), 333-341. doi: 10.1113/jphysiol.2006.113191
Pang, K. C., Frith, M. C. and Mattick, J. S. (2006). Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends In Genetics, 22 (1), 1-5. doi: 10.1016/j.tig.2005.10.003
Mattick, John S. (2005). The functional genomics of noncoding RNA. Science, 309 (5740), 1527-1528. doi: 10.1126/science.1117806
The FANTOM Consortium, Gough, J., Frith, M. C., Ravasi, T., Wells, C., Forrest, A. R. R., Davis, M. J., Aturaliya, R. N., Bailey, T. L., Crowe, M. L., Faulkner, G., Pang, K. C., Teasdale, R. D., Grimmond, S. M., Mattick, J. S., Hume, D. A. and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Core Team) (2005). The transcriptional landscape of the mammalian genome. Science, 309 (5740), 1559-1563. doi: 10.1126/science.1112014
Gagen, M. J. and Mattick, J. S. (2005). Inherent size constraints on prokaryote gene networks due to "accelerating" growth. Theory In Biosciences, 123 (4), 381-411. doi: 10.1016/j.thbio.2005.02.002
Whitchurch, Cynthia B., Beatson, Scott A., Comolli, James C., Jakobsen, Thania, Sargent, Jennifer L., Bertrand, Jacob J., West, Joyce, Klausen, Mikkel, Waite, Leslie L., Kang, Pil Jung, Tolker-Nielsen, Tim, Mattick, John S. and Engel, Joanne N. (2005). Pseudomonas aeruginosa fimL regulates multiple virulence functions by intersecting with Vfr-modulated pathways. Molecular Microbiology, 55 (5), 1357-1378. doi: 10.1111/j.1365-2958.2005.04479.x
Mattick, J. S. and Makunin, I. V. (2005). Small regulatory RNAs in mammals. Human Molecular Genetics, 14 (Sp. Iss. 1), R121-R132. doi: 10.1093/hmg/ddi101
Glazov, E. A., Pheasant, M., McGraw, E. A., Bejerano, G. and Mattick, J. S. (2005). Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing. Genome Research, 15 (6), 800-808. doi: 10.1101/gr.3545105
Pang, Ken C., Stephen, Stuart, Engstrom, Par G., Tajul-Arifin, Khairina, Chen, Weisan, Wahlestedt, Claes, Lenhard, Boris, Hayashizaki, Yoshihide and Mattick, John S. (2005). RNAdb - a comprehensive mammalian noncoding RNA database. Nucleic Acids Research, 33 (Database Issue), D125-D130. doi: 10.1093/nar/gki089
Gagen, M. J. and Mattick, J. S. (2005). Accelerating, hyperaccelerating, and decelerating networks. Physical Review E, 72 (1) 016123, 993-998. doi: 10.1103/PhysRevE.72.016123
Mattick, J. S. (2005). What makes a human?. The Scientist, 19 (4), 32-33.
Mattick, JS and Gagen, MJ (2005). Accelerating networks. Science, 307 (5711), 856-858. doi: 10.1126/science.1103737
Frith, MC, Pheasant, M and Mattick, JS (2005). The amazing complexity of the human transcriptome. European Journal of Human Genetics, 13 (8), 894-897. doi: 10.1038/sj.ejhg.5201459
RIKEN GER Group,, Wells, C. A., Frith, M., Ravasi, T., Pang, K. C., Hallinan, J. S., Mattick, J. S., Hume, D. A., Katayama, S., Tomaru, Y., Kasukawa, T., Waki, K., Nakanishi, M., Nakamura, M. and Nishida, H. (2005). Antisense transcription in the mammalian transcriptome. Science, 309 (5740), 1564-1566. doi: 10.1126/science.1112009
Mattick, John S. (2004). Digital RNA regulation of complex organisms. Gene Therapy and Regulation, 2 (4), 313-319. doi: 10.1163/1568558043967517
Mattick, J. S. (2004). Response. Nature Reviews. Genetics, 5 (4), 316-323. doi: 10.1038/nrg1321-c2
Bejerano, G., Pheasant, M., Makunin, I. V., Stephen, S., Kent, W. J., Mattick, J. S. and Haussler, D. (2004). Ultraconserved elements in the human genome. Science, 304 (5675), 1321-1325. doi: 10.1126/science.1098119
Gagen, M. J. and Mattick, J. S. (2004). Inherent size constraints on prokaryote gene networks due to "accelerating" growth. Quantitative Biology, 1-15.
Gagen, M. J. and Mattick, J. S. (2004). Failed "nonaccelerating" models of prokaryote gene regulatory networks. Quantitative Biology, 1-13.
Yuan, Z., Mattick, J. S. and Teasdale, R. D. (2004). SVMtm: Support vector machines to predict transmembrane segments. Journal of Computational Chemistry, 25 (5), 632-636. doi: 10.1002/jcc.10411
Mattick, J. S. (2004). RNA regulation: a new genetics?. Nature Reviews Genetics, 5 (4), 316-323. doi: 10.1038/nrg1321
Huang, Bixing, Ru, Kelin, Yuan, Zheng, Whitchurch, Cynthia B. and Mattick, John S. (2004). tonB3 is required for normal twitching motility and extracellular assembly of type IV pili. Journal of Bacteriology, 186 (13), 4387-4389. doi: 10.1128/JB.186.13.4387-4389.2004
Mattick, J. S. (2004). The hidden genetic program of complex organisms. Scientific American, 291 (4), 60-67. doi: 10.1038/scientificamerican1004-60
Whitchurch, Cynthia B., Leech, Andrew J., Young, Michael D., Kennedy, Derek, Sargent,Jennifer L., Bertrand, Jacob J., Semmler, Annalese B.T., Mellick, Albert S., Martin, Paul R., Alm, Richard A., Hobbs, Matthew, Beatson, Scott A., Huang, Bixing, Nguyen, Lam, Commolli, James C., Engel, Joanne N., Darzins, Aldis and Mattick, John S. (2004). Characterization of a complex chemosensory signal transduction system which controls twitching motility in Pseudomonas aeruginosa. Molecular Microbiology, 52 (3), 873-893. doi: 10.1111/j.1365-2958.2004.04026.x
Mattick, J. S. (2004). The regulatory architecture of the human genome. Asia Pacific Journal of Clinical Nutrition, 13, 14-14.
Mattick, John S. (2003). The human genome and the future of medicine. The Medical Journal of Australia, 179 (4), 212-216. doi: 10.5694/j.1326-5377.2003.tb05505.x
Nouwens, Amanda S., Beatson, Scott A., Whitchurch, Cynthia B., Walsh, Bradley. J., Schweizer, Herbert P., Mattick, John S. and Cordwell, Stuart J. (2003). Proteome analysis of extracellular proteins regulated by the las and rhl quorum sensing systems in Pseudomonas aeruginosa PAO1. Microbiology-sgm, 149 (5), 1311-1322. doi: 10.1099/mic.0.25967-0
Mattick, John S. (2003). Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays, 25 (10), 930-939. doi: 10.1002/bies.10332
Huang, Bixing, Whitchurch, Cynthia B. and Mattick, John S. (2003). FimX, a multidomain protein connecting environmental signals to twitching motility in Pseudomonas aeruginosa. Journal of Bacteriology, 185 (24), 7068-7076. doi: 10.1128/JB.185.24.7068-7076.2003
Tajul Arifin, K., Teasdale, R. D., Ravasi, T., Hume, D. A., RIKEN GER Group,, GSL Members, and Mattick, J. S. (2003). Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome. Genome Reaserch, 13 (6B), 1416-1429. doi: 10.1101/gr.1015703
Saunders, Neil F. W., Thomas, Torsten, Curmi, Paul M. G., Mattick, John S., Kuczek, Elizabeth, Slade, Rob, Davis, John, Franzmann, Peter D., Boone, David, Rusterholtz, Karl, Feldman, Robert, Gates, Chris, Bench, Shellie, Sowers, Kevin, Kadner, Kristen, Aerts, Andrea, Dehal, Paramvir, Detter, Chris, Glavina, Tijana, Lucas, Susan, Richardson, Paul, Larimer, Frank, Hauser, Loren, Land, Miriam and Cavicchioli, Ricardo (2003). Mechanisms of Thermal Adaptation Revealed From the Genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Research, 13 (7), 1580-1588. doi: 10.1101/gr.1180903
Croft, L., Lercher, M.J., Gagen, M. J. and Mattick, J. S. (2003). Is prokaryotic complexity limited by accelerated growth in regulatory overhead?. Genome Biology, 5 (1), 1-25. doi: 10.1186/gb-2003-5-1-p2
Taft, Ryan J. and Mattick, John S. (2003). Increasing biological complexity is positively correlated with the relative genome-wide expansion of non-protein-coding DNA sequences. Genome Biology, 5 (1), 1-24. doi: 10.1186/gb-2003-5-1-p1
Yuan, Zheng, Burrage, Kevin and Mattick, John S. (2002). Prediction of protein solvent accessibility using support vector machines. Proteins: Structure, Function, and Genetics, 48 (3), 566-570. doi: 10.1002/prot.10176
Beatson, Scott A., Whitchurch, Cynthia B., Sargent, Jennifer L., Levesque, Roger C. and Mattick, John S. (2002). Differential regulation of twitching motility and elastase production by Vfr in Pseudomonas aeruginosa. Journal of Bacteriology, 184 (13), 3605-3613. doi: 10.1128/JB.184.13.3605-3613.2002
Guliani, Sandeep, Polkinghorne, Ian, Smith, Greg A., Young, Peter, Mattick, John S. and Mahony, Timothy J. (2002). Macropodid herpesvirus 1 encodes genes for both thymidylate synthase and ICP34.5. Virus Genes, 24 (3), 207-213. doi: 10.1023/A:1015396430131
Mattick, JS (2002). Type IV pili and twitching motility. Annual Review of Microbiology, 56 (1), 289-314. doi: 10.1146/annurev.micro.56.012302.160938
Beatson, S. A., Whitchurch, C. B., Semmler, A. B. T. and Mattick, J. S. (2002). Quorum sensing is not required for twitching motility in Pseudomonas aeruginosa. Journal of Bacteriology, 184 (13), 3598-3604. doi: 10.1128/JB.184.13.3598-3604.2002
Whitchurch, C. B., Erova, T. E., Emery, J. A., Sargent, J. L., Harris, J. M., Semmler, A. B. T., Young, M. D., Mattick, J. S. and Wozniak, D. J. (2002). Phosphorylation of the Pseudomonas aeruginosa response regulator AlgR is essential for type IV fimbria-mediated twitching motility. Journal of Bacteriology, 184 (16), 4544-4554. doi: 10.1128/JB.184.16.4544-4554.2002
Utama, B., Kennedy, D., Ru, K. L. and Mattick, J. S. (2002). Isolation and characterization of a new nucleolar protein, Nrap, that is conserved from yeast to humans. Genes To Cells, 7 (2), 115-132. doi: 10.1046/j.1356-9597.2001.00507.x
Whitchurch, C. B., Tolker-Nielsen, T., Ragas, P. C. and Mattick, J. S. (2002). Extracellular DNA required for bacterial biofilm formation. Science, 295 (5559), 1487-1487. doi: 10.1126/science.295.5559.1487
Kennedy, D., French, J., Guitard, E., Ru, K. L., Tocque, B. and Mattick, J. (2002). Characterization of G3BPs: Tissue specific expression, chromosomal localisation and rasGAP(120) binding studies. Journal of Cellular Biochemistry, 84 (1), 173-187. doi: 10.1002/jcb.1277
Mattick, John S. and Gagen, Michael J. (2001). The evolution of controlled multitasked gene networks: The role of introns and other noncoding RNAs in the development of complex organisms. Molecular Biology And Evolution, 18 (9), 1611-1630.
Ross, B. C., Czajkowski, L., Hocking, D., Margetts, M., Webb, E., Rothel, L., Patterson, M., Aguis, C., Camuglia, S., Reynolds, E., Littlejohn, T., Gaeta, B., Ng, A., Kuczek, E. S. and Mattick, J. S. (2001). Identification of vaccine candidate antigens from a genomic analysis of Porphyomonas gingivalis. Vaccine, 19 (30), 4135-4142. doi: 10.1016/S0264-410X(01)00173-6
Pantaleon, M., Kanai-Azuma, M., Mattick, J. S., Kaibuchi, K., Kaye, P. L. and Wood, S. A. (2001). FAM deubiquitylating enzyme is essential for preimplantation mouse embryo development. Mechanisms of Development, 109 (2), 151-160. doi: 10.1016/S0925-4773(01)00551-2
Mattick, J. S. (2001). Non-coding RNAs: the architects of eukaryotic complexity. Embo Reports, 2 (11), 986-991. doi: 10.1093/embo-reports/kve230
Mattick, J. S. and Gagen, M. J. (2001). The evolution of controlled multitasked gene networks: The role of introns and other noncoding RNAs in the development of complex organisms. Molecular Biology and Evolution, 18 (9), 1611-1630. doi: 10.1093/oxfordjournals.molbev.a003951
Mattick, John (2000). Genomics down under. EMBO reports, 1 (3), 204-207. doi: 10.1093/embo-reports/kvd060
Fitzgerald, J., Kennedy, D., Viseshakul, N., Cohen, B. N., Mattick, J., Bateman, J. F. and Forsayeth, J. R. (2000). UNCL, the mammalian homologue of UNC-50, is an inner nuclear membrane RNA-binding protein. Brain Research, 877 (1), 110-123. doi: 10.1016/S0006-8993(00)02692-5
Croft, Larry, Schandorff, Soeren, Clark, Francis, Burrage, Kevin, Arctander, Peter and Mattick, John S. (2000). ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome. Nature Genetics, 24 (4), 340-341. doi: 10.1038/74153
Huang, Bixing, Whitchurch, Cynthia B., Croft, Larry, Beatson, Scott A. and Mattick, John S. (2000). A minimal tiling path cosmid library for functional analysis of the Pseudomonas aeruginosa PAO1 genome. Microbial and Comparative Genomics, 5 (4), 189-203. doi: 10.1089/omi.1.2000.5.189
Kanai-Azuma, Masami, Mattick, John S., Kaibuchi, Kozo and Wood, Stephen A. (2000). Co-localization of FAM and AF-6, the mammalian homologues of Drosophila faf and canoe, in mouse eye development. Mechanisms of Development, 91 (1-2), 383-386. doi: 10.1016/S0925-4773(99)00294-4
Semmler, A. B. T., Whitchurch, C. B., Leech, A. and Mattick, J. S. (2000). Identification of a novel gene, fimV, involved in twitching motility in Pseudomonas aeruginosa. Microbiology, 146 (6), 1321-1332. doi: 10.1099/00221287-146-6-1321
Croft, L., Beatson, S. A., Whitchurch, C. B., Huang, B., Blakeley, R. L. and Mattick, J. S. (2000). An interactive web-based Pseudomonas aeruginosa genome database: discovery of new genes, pathways and structures. Microbiology, 146 (10), 2351-2364. doi: 10.1099/00221287-146-10-2351
GulianiS, SmithGA, YoungPL, MattickJS and Mahony, T. J. (1999). Reactivation of a macropodid herpesvirus from the eastern grey kangaroo (Macropus giganteus) following corticosteroid treatment. Veterinary Microbiology, 68 (1-2), 59-69. doi: 10.1016/S0378-1135(99)00061-9
Comolli, James C., Hauser, Alan R., Waite, Leslie, Whitchurch, Cynthia B., Mattick, John S. and Engel, Joanne N. (1999). Pseudomonas aeruginosa gene products PilT and PilU are required for cytotoxicity in vitro and virulence in a mouse model of acute pneumonia. Infection and Immunity, 67 (7), 3625-3630. doi: 10.1128/iai.67.7.3625-3630.1999
Bolton, J. A., Wood, S. A., Kennedy, D., Don, R. H. and Mattick, J. S. (1999). Retinoic acid-dependent upregulation of mouse folate receptor-alpha expression in embryonic stem cells, and conservation of alternative splicing patterns. Gene, 230 (2), 215-224. doi: 10.1016/S0378-1119(99)00081-5
Semmler, A. B. T., Whitchurch, C. B. and Mattick, J. S. (1999). A re-examination of twitching motility in Pseudomonas aeruginosa. Microbiology, 145 (10), 2863-2873. doi: 10.1099/00221287-145-10-2863
McCarthy, F. M., Smith, G. A. and Mattick, J. S. (1999). Molecular characterisation of Australian bovine enteroviruses. Veterinary Microbiology, 68 (1-2), 71-81. doi: 10.1016/S0378-1135(99)00062-0
Watson A.A., Alm R.A. and Mattick J.S. (1996). Identification of a gene, pilF, required for type 4 fimbrial biogenesis and twitching motility in Pseudomonas aeruginosa. Gene, 180 (1-2), 49-56. doi: 10.1016/S0378-1119(96)00403-9
Mattick J.S., Whitchurch C.B. and Alm R.A. (1996). The molecular genetics of type-4 fimbriae in Pseudomonas aeruginosa - A review. Gene, 179 (1), 147-155. doi: 10.1016/S0378-1119(96)00441-6
Watson, Alison A., Alm, Richard A. and Mattick, John S. (1996). Construction of improved vectors for protein production in Pseudomonas aeruginosa. Gene, 172 (1), 163-164. doi: 10.1016/0378-1119(96)00026-1
Kennedy, D, Ramsdale, T, Mattick, J and Little, M (1996). An RNA recognition motif in Wilms' tumour protein (WT1) revealed by structural modelling. Nature Genetics, 12 (3), 329-332. doi: 10.1038/ng0396-329
Alm, Richard A., Bodero, Amanda J., Free, Patricia D. and Mattick, John S. (1996). Identification of a novel gene, pilZ, essential for type 4 fimbrial biogenesis in Pseudomonas aeruginosa. Journal of Bacteriology, 178 (1), 46-53. doi: 10.1128/jb.178.1.46-53.1996
Alm, Richard A., Dalrymple, Brian P. and Mattick, John S. (1994). Sequencing and expression of the aroA gene from Dichelobacter nodosus. Gene, 145 (1), 97-101. doi: 10.1016/0378-1119(94)90329-8
Spring, K. J., Mattick, J. S. and Don, R. H. (1994). Escherichia coli gpt as a positive and negative selectable marker in embryonal stem cells. BBA - Gene Structure and Expression, 1218 (2), 158-162. doi: 10.1016/0167-4781(94)90005-1
Ablett, E. M. and Mattick, J. S. (1994). Conservation of invertebrate biodiversity: the role of ex situ preservation of genetic material. Memoirs - Queensland Museum, 36 (1), 3-6.
Mattick J.S. (1994). Introns: evolution and function. Current Opinion in Genetics and Development, 4 (6), 823-831. doi: 10.1016/0959-437X(94)90066-3
Abedinia, M, Layfield, R, Jones, SM, Nixon, PF and Mattick, JS (1992). Nucleotide and predicted amino acid sequence of a cDNA clone encoding part of human transketolase. Biochemical and Biophysical Research Communications, 183 (3), 1159-1166. doi: 10.1016/S0006-291X(05)80312-2
Lapsys, Naras M., Layfield, R., Baker, E., Callen, D. F., Sutherland, G. R., Abedinia, M., Nixon, P. F. and Mattick, J. S. (1992). Chromosomal location of the human transketolase gene. Cytogenetic and Genome Research, 61 (4), 274-275. doi: 10.1159/000133421
Smith, G. A., Young, P. L. and Mattick, J. S. (1991). Nucleotide and amino acid sequence analysis of the thymidine kinase gene of a bovine encephalitis herpesvirus. Archives of Virology, 119 (3-4), 199-210. doi: 10.1007/BF01310670
Don R.H., Cox P.T., Wainwright B.J., Baker K. and Mattick J.S. (1991). 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Research, 19 (14), 4008. doi: 10.1093/nar/19.14.4008
Whitchurch, Cynthia B., Hobbs, Matthew, Livingston, Susan P., Krishnapillai, Viji and Mattick, John S. (1991). Characterisation of a Pseudomonas aeruginosa twitching motility gene and evidence for a specialised protein export system widespread in eubacteria. Gene, 101 (1), 33-44. doi: 10.1016/0378-1119(91)90221-V
Jennings, P. A., Bills, M. M., Irving, D. O. and Mattick, J. S. (1989). Fimbriae of Bacteroides nodosus: Protein engineering of the structural subunit for the production of an exogenous peptide. Protein Engineering, Design and Selection, 2 (5), 365-369. doi: 10.1093/protein/2.5.365
Conference Papers
Plummer, Prue N., Balsara, Spenta, Umer, Brittany, Taft, Ryan, Ferro, Vito, Mattick, John S., Swarbrick, Alex, McMillan, Nigel, Mittal, Vivek and Mellick, Albert S. (2013). Micrornas as novel anti-angiogenesis therapeutic targets. 8th Meeting of the Australasian GeneTherapy-Society, Sydney, NSW Australia, 08-10 May 2013. Hoboken, NJ United States: John Wiley and Sons Inc.. doi: 10.1002/jgm.2740
Cossetti, Chiara, Mercer, Tim R., Alpi, Emanuele, Leonardi, Tommaso, Drago, Denise, Iraci, Nunzio, Alfaro-Cervello, Clara, Dinger, Marcel E., Dietmann, Sabine, Crawford, Joanna, Caddeo, Carla, Garcia Verdugo, Manuel, Bachi, Angela, Mattick, John S. and Pluchino, Stefano (2012). Neural stem cells sort protein and RNA cargoes for export with exosomes in response to inflammation. 11th International Congress of Neuroimmunology (ISNI), Boston MA., United States, 4-8 November 2012. Amsterdam, The Netherlands: Elsevier.
Pineda, Sandy S., Jones, Alun, Nicholson, Graham M., Escoubas, Pierre, Mattick, John S. and King, Glenn F. (2012). Understanding the chemical diversity of spider venoms using a combined genomic, transcriptomic and proteomic approach. 17th World Congress of the International-Society-on-Toxinology (IST)/Venom Week/4th International Scientific Symposium on All Things Venomous, Honolulu, Hawaii, United States, 8-13 July 2012. Kidlington, Oxford, United Kingdom: Pergamon. doi: 10.1016/j.toxicon.2012.04.060
Plummer, P. N., Taft, R., Mattick, J., McMillan, N., Swarbrick, A., Brink, R., Mittal, V. and Mellick, A. S. (2011). MicroRNAs as tools to target bone marrow mediated tumour angiogenesis. Biennial Meeting of the Australasian Gene Therapy Society (7th, AGTS, 2011), Parkville, VIC, Australia, 4-6 May 2011. doi: 10.1002/jgm.1582
Mattick, John S. (2011). RNA at the epicentre of human development. Biennial Meeting of the Australasian Gene Therapy Society (7th, AGTS, 2011), Parkville, VIC, Australia, 4-6 May 2011. doi: 10.1002/jgm.1582
Khaitan, D., Dinger, M. E., Mazar, J., Crawford, J., Smith, M. A., Mattick, J. S. and Perera, R. J. (2011). The melanoma-upregulated long noncoding RNA SPRY4-IN1 modulates apoptosis and invasion. 36th FEBS Congress, Biochemistry for Tomorrows Medicine, Torino, Italy, 25-30 June 2010. Oxford, United Kingdom: Wiley-Blackwell Publishing. doi: 10.1111/j.1742-4658.2011.08137.x
Plummer, P. N., Taft, R., Mattick, J., McMillan, N., Swarbrick, A., Brink, R., Mittal, V. and Mellick, A. S. (2011). MicroRNAs as tools to target bone marrow mediated tumour angiogenesis. Biennial Meeting of the Australasian Gene Therapy Society (7th, AGTS, 2011), Parkville, VIC, Australia, 4-6 May 2011. doi: 10.1002/jgm.1582
Mattick, J. S. (2011). Challenging the dogma: the central role of RNA in human development and cognition. 36th FEBS Congress, Biochemistry for Tomorrows Medicine, Torino, Italy, 25-30 June 2011. Oxford, United Kingdom: Wiley-Blackwell Publishing. doi: 10.1111/j.1742-4658.2011.08142.x
Plummer, P. N., Taft, R., Mattick, J., McMillan, N., Swarbrick, A., Brink, R., Mittal, V. and Mellick, A. S. (2010). Targeting bone marrow mediated tumour angiogenesis. Gold Coast Health and Medical Research Conference, Gold Coast, QLD, Australia, 2-3 December 2010.
Dinger, ME, Mercer, TR, Amaral, PP, Pang, KC, Sunkin, SM, Perkins, AC and Mattick, JS (2009). LONG NONCODING RNAs: INSIGHTS INTO FUNCTION. 3rd Marie Curie-Genome Architecture in Relation to Disease Meeting (MC-GARD), Edinburgh Scotland, Apr 01-05, 2009.
Mattick, John S. (2009). Deconstructing the dogma: A new view of the evolution and genetic programming of complex organisms. GenConText 2008: Symposium on Natural Genetic Engineering and Natural Genome Editing, Salzburg, Austria, 3-6 July 2008. Hoboken, NJ, U.S.A.: Wiley-Blackwell Publishing. doi: 10.1111/j.1749-6632.2009.04991.x
Mercer, Tim R., Dinger, Marcel E., Wilhelm, Dagmar E., Solda, Giulia S., Koopman, Peter A. and Mattick, John S. (2009). Regulated independent expression of 3' untranslated regions in mammals. 3rd Marie Curie-Genome Architecture in Relation to Disease Meeting (MC-GARD), Edinburgh Scotland, 01-05 April 2009.
Mattick, JS, Croft, LJ, Dinger, ME, Pheasant, M, Makunin, IV, Amiri, MA, Mercer, TR, Pang, KC, Simons, C and Taft, RJ (2007). The human genome as an RNA machine. 32nd Congress of the Federation-of-European-Biochemical-Societies (FEBS), Vienna AUSTRIA, JUL 07-12, 2007. OXFORD: BLACKWELL PUBLISHING.
Mattick, John S. (2006). The hidden layer of noncoding rna in the genetic programming of complex organisms. 77th Annual Meeting of the Genetics Society of Japan, Tokyo, Japan, 27-29 September 2005. Mishima, Shizuoka, Japan: Genetics Society of Japan. doi: 10.1266/ggs.81.149
Hallinan, J. S., Bradley, D R, Mattick, J S and Wiles, J H (2006). Effects of an RNA control layer on the state space of boolean models of genetic regulatory networks. 2006 IEEE Congress on Evolutionary Computation, Vancouver, Canada, 16-21 July, 2006. New Jersey, USA: IEEE. doi: 10.1109/cec.2006.1688626
Perkins, A. C., Bruce, S., Dinger, M., Gardiner, B., Steptoe, A., Burke, L., Mattick, J. S. and Grimmond, S. M. (2006). Transcription factors, non-coding RNAs and ES cell differentiation in vitro and in vivo. 7th Transgenic Technology Meeting (TT2007), Brisbane, Australia, 12-14 February, 2007. Netherlands: Kluwer Academic. doi: 10.1007/s11248-006-9047-x
Wiles, Janet, Geard, Nicholas L., Watson, James, Willadsen, Kai, Mattick, John, Bradley, Daniel and Hallinan, Jennifer (2005). There's more to a model than code: understanding and formalizing in silico modeling experience. GECCO'05: The Genetic and Evolutionary Computation Conference 2005, Washington, DC, USA, 25-29 June, 2005. New York, NY, USA: Association for Computing Machinery. doi: 10.1145/1102256.1102318
Lukowski, S., Mattick, J. S. and Trezise, A. E. O. (2005). Uncovering the hidden layer Of RNA regulatory networks. 26th Annual Lorne Conference on the Organization and Expression of the Genome, Phillip Island, Victoria, 13-17 February 2005.
Garske, L., Bell, S. C., Beatson, S., Walsh, S., Mattick, J., Leach, A. and Whitchurch, C. (2003). Pseudomonas aeruginosa exposed to sub-inhibitory ceftazidime or tobramycin has reduced homoserine lactones. The Thoracic Society of Australia and New Zealand 2003 Annual Scientific Meeting, Adelaide, Australia, 4 - 9 April 2003. Carlton, VIC: Blackwell Science. doi: 10.1111/j.1440-1843.2003.supp_1.x
Aung, H. T., Harrison, D. K., Findlay, I., Mattick, J. S., Martin, N. and Carroll, B. J. (2002). Stringent genetic programming of DNA methylation in humans. Australian Human Gene Mapping Meeting, Hobart, 4-6 December, 2002.
Pantaleon, M., Kanai-Azum, M., Mattick, J. S., Kaibuchi, K., Kaye, P. L. and Wood, S. (2000). FAM, a ubiquitin specific protease, is essential for early mouse development. Early Regulation of Mammalian Development, Ardoe House, Aberdeen, Scotland, 18 - 20 September, 2000. Penicuik, Midlothian, UK: British Society of Animal Science.
Guliani, Sandeep, Smith, Gregory A., Young, Peter L., Mattick, John S. and Mahony, Timothy J. (1999). Reactivation of a macropodid herpesvirus from the eastern grey kangaroo (Macropus giganteus) following corticosteroid treatment. doi: 10.1016/S0378-1135(99)00061-9
McCarthy, F. M., Smith, G. A. and Mattick, J. S. (1999). Molecular characterisation of Australian bovine enteroviruses. doi: 10.1016/S0378-1135(99)00062-0
Croft, L., Clark, F., Schandorff, S., Burrage, K. and Mattick, J. S. (1999). ISIS - The Intron Database. A glimpse of Intron function. ComBio 99, Conrad Jupiters, Gold Coast, 27-30 September, 1999. Kent Town, SA: Australian Society for Biochemistry & Molecular Biology.
Utama, B., Kennedy, H. D., Ru, K. and Mattick, J. S. (1999). Isolation and preliminary characterization of novel nucleolar protein. ComBio 99, Conrad Jupiters, Gold Coast, 27-30 September, 1999. Kent Town, SA: Australian Society for Biochemistry & Molecular Biology.
Kennedy, H. D., French, J., Verhagen, A. and Mattick, J. S. (1999). The ras-GTPase-Activating protein SH3-Domain-binding family of proteins (G3BPs):Implications in ras-GAP120 signalling to RNA-stability and cancer progression. ComBio 99, Conrad Jupiters, Gold Coast, 27th - 30th September, 1999. Kent Town, SA: Aust. Society for Biochemistry & Molecular Biology.
Pantaleon, M., Kanai-Azum, M., Mattick, J. S., Kaibuchi, K., Kaye, P. L. and Wood, S. (1999). Expression of FAM, a ubiquitin specific protease in mouse embryos. 30th Anual Conference of Australian Society for Reproductive Biology, Hilton-On-The-Park, Melbourne, 26 -29 September, 1999. Melbourne, Vic: Australian Society for Reproductive Biology.
Croft, L., Beatson, S. A., Whitchurch, C. B., Blakeley, R. L., Huang, B. and Mattick, J. S. (1999). One approach to developing a bacterial genome database. ComBio 99, Conrad Jupiters, Gold Coast, 27-30 September, 1999. Kent Town, SA: Aust. Society for Biochemistry & Molecular Biology.
Thesis
Mattick, John S. (2024). The roles of regulatory RNAs in the gene4c programming of complex organisms. Higher Doctorate, Faculty of Science, The University of Queensland. doi: 10.14264/fde06d1
Patent
Mattick, J. S., Gagen, M. J. and Stanley, S. (2003). A method for identifying effector molecules for gene network integration. WO 03/025229 A1.
Newspaper Article
Mattick, J. S. (1999, 01 04). Let's show what we're made of The Australian 13-13.