Publications
Journal Articles
Xiang, Ruidong, Hayes, Ben J., Vander Jagt, Christy J., MacLeod, Iona M., Khansefid, Majid, Bowman, Phil J., Yuan, Zehu, Prowse-Wilkins, Claire P., Reich, Coralie M., Mason, Brett A., Garner, Josie B., Marett, Leah C., Chen, Yizhou, Bolormaa, Sunduimijid, Daetwyler, Hans D., Chamberlain, Amanda J. and Goddard, Michael E. (2018) Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues. BMC Genomics, 19 . doi:10.1186/s12864-018-4902-8
Wang, Min, Hancock, Timothy P., Chamberlain, Amanda J., Vander Jagt, Christy J., Pryce, Jennie E., Cocks, Benjamin G., Goddard, Mike E. and Hayes, Benjamin J. (2018) Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits. BMC Genomics, 19 1: . doi:10.1186/s12864-018-4800-0
Kemper, Kathryn E., Bowman, Philip J., Hayes, Benjamin J., Visscher, Peter M. and Goddard, Michael E. (2018) A multi-trait Bayesian method for mapping QTL and genomic prediction. Genetics Selection Evolution, 50 1: 10. doi:10.1186/s12711-018-0377-y
Calus, M. P. L., Goddard, M. E., Wientjes, Y. C. J., Bowman, P. J. and Hayes, B. J. (2018) Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selection. Journal of Dairy Science, 101 5: 4279-4294. doi:10.3168/jds.2017-13366
Bouwman, Aniek C., Daetwyler, Hans D., Chamberlain, Amanda J., Ponce, Carla Hurtado, Sargolzaei, Mehdi, Schenkel, Flavio S., Sahana, Goutam, Govignon-Gion, Armelle, Boitard, Simon, Dolezal, Marlies, Pausch, Hubert, Brøndum, Rasmus F., Bowman, Phil J., Thomsen, Bo, Guldbrandtsen, Bernt, Lund, Mogens S., Servin, Bertrand, Garrick, Dorian J., Reecy, James, Vilkki, Johanna, Bagnato, Alessandro, Wang, Min, Hoff, Jesse L., Schnabel, Robert D., Taylor, Jeremy F., Vinkhuyzen, Anna A. E., Panitz, Frank, Bendixen, Christian, Holm, Lars-Erik, Gredler, Birgit, Hozé, Chris, Boussaha, Mekki, Sanchez, Marie-Pierre, Rocha, Dominique, Capitan, Aurelien, Tribout, Thierry, Barbat, Anne, Croiseau, Pascal, Drögemüller, Cord, Jagannathan, Vidhya, Vander Jagt, Christy, Crowley, John J., Bieber, Anna, Purfield, Deirdre C., Berry, Donagh P., Emmerling, Reiner, Götz, Kay-Uwe, Frischknecht, Mirjam, Russ, Ingolf, Sölkner, Johann, Van Tassell, Curtis P., Fries, Ruedi, Stothard, Paul, Veerkamp, Roel F., Boichard, Didier, Goddard, Mike E. and Hayes, Ben J. (2018) Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. Nature Genetics, 50 3: 362-367. doi:10.1038/s41588-018-0056-5
Wang, Tingting, Chen, Yi-Ping Phoebe, MacLeod, Iona M., Pryce, Jennie E., Goddard, Michael E. and Hayes, Ben J. (2017) Application of a Bayesian non-linear model hybrid scheme to sequence data for genomic prediction and QTL mapping. BMC Genomics, 18 1: 618. doi:10.1186/s12864-017-4030-x
Wang, Tingting, Chen, Yi-Ping Phoebe, Bowman, Phil J., Goddard, Michael E. and Hayes, Ben J. (2016) A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping. BMC Genomics, 17 1: 744. doi:10.1186/s12864-016-3082-7
Hayes, Ben J., Daetwyler, Hans D. and Goddard, Mike E. (2016) Models for genome x environment interaction: examples in livestock. Crop Science, 56 5: 2251-2259. doi:10.2135/cropsci2015.07.0451
Gratten, Jacob, Wray, Naomi R., Peyrot, Wouter J., McGrath, John J., Visscher, Peter M. and Goddard, Michael E. (2016) Risk of psychiatric illness from advanced paternal age is not predominantly from de novo mutations. Nature Genetics, 48 7: 718-+. doi:10.1038/ng.3577
Zhu, Zhihong, Zhang, Futao, Hu, Han, Bakshi, Andrew, Robinson, Matthew R., Powell, Joseph E., Montgomery,Grant W., Goddard, Michael E., Wray, Naomi R., Visscher, Peter M. and Yang, Jian (2016) Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets. Nature Genetics, 48 5: 481-487. doi:10.1038/ng.3538
Bolormaa, Sunduimijid, Hayes, Ben J., van der Werf, Julius H. J., Pethick, David, Goddard, Michael E. and Daetwyler, Hans D. (2016) Detailed phenotyping identifies genes with pleiotropic effects on body composition. BMC Genomics, 17 224: 1-21. doi:10.1186/s12864-016-2538-0
Raven, Lesley-Ann, Cocks, Benjamin G., Kemper, Kathryn E., Chamberlain, Amanda J., Vander Jagt, Christy J., Goddard, Michael E. and Hayes, Ben J. (2016) Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle. Mammalian Genome, 27 1-2: 81-97. doi:10.1007/s00335-015-9613-8
Chamberlain, Amanda J., Vander Jagt, Christy J., Hayes, Benjamin J., Khansefid, Majid, Marett, Leah C., Millen, Catriona A., Nguyen, Thuy T. T. and Goddard, Michael E. (2015) Extensive variation between tissues in allele specific expression in an outbred mammal. BMC Genomics, 16 1: . doi:10.1186/s12864-015-2174-0
Tucker, George, Loh, Po-Ru, MacLeod, Iona M., Hayes, Ben J., Goddard, Michael E., Berger, Bonnie and Price, Alkes L. (2015) Two-variance-component model improves genetic prediction in family datasets. American Journal of Human Genetics, 97 5: 677-690. doi:10.1016/j.ajhg.2015.10.002
Pryce, Jennie E., Haile-Mariam, Mekonnen, Goddard, Michael E. and Hayes, Ben J. (2014) Identification of genomic regions associated with inbreeding depression in Holstein and Jersey dairy cattle. Genetics Selection Evolution, 46 . doi:10.1186/s12711-014-0071-7
Daetwyler, Hans D., Capitan, Aurelien, Pausch, Hubert, Stothard, Paul, Van Binsbergen, Rianne, Brondum, Rasmus F., Liao, Xiaoping, Djari, Anis, Rodriguez, Sabrina C., Grohs, Cecile, Esquerre, Diane, Bouchez, Olivier, Rossignol, Marie-Noelle, Klopp, Christophe, Rocha, Dominique, Fritz, Sebastien, Eggen, Andre, Bowman, Phil J., Coote, David, Chamberlain, Amanda J., Anderson, Charlotte, VanTassell, Curt P., Hulsegge, Ina, Goddard, Mike E., Guldbrandtsen, Bernt, Lund, Mogens S., Veerkamp, Roel F., Boichard, Didier A., Fries, Ruedi and Hayes, Ben J. (2014) Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nature Genetics, 46 8: 858-865. doi:10.1038/ng.3034
Bolormaa, Sunduimijid, Pryce, Jennie E., Reverter, Antonio, Zhang, Yuandan, Barendse, William, Kemper, Kathryn, Tier, Bruce, Savin, Keith, Hayes, Ben J. and Goddard, Michael E. (2014) A multi-trait, meta-analysis for detecting pleiotropic polymorphisms for stature, fatness and reproduction in beef cattle. PLoS Genetics, 10 3: . doi:10.1371/journal.pgen.1004198
Lee, S. Hong, Ripke, Stephan, Neale, Benjamin M., Faraone, Stephen V., Purcell, Shaun M., Perlis, Roy H., Mowry, Bryan J., Thapar, Anita, Goddard, Michael E., Witte, John S., Absher, Devin, Agartz, Ingrid, Akil, Huda, Amin, Farooq, Andreassen, Ole A., Anjorin, Adebayo, Anney, Richard, Anttila, Verneri, Arking, Dan E., Asherson, Philip, Azevedo, Maria H., Backlund, Lena, Badner, Judith A., Bailey, Anthony J., Banaschewski, Tobias, Barchas, Jack D., Barnes, Michael R., Barrett, Thomas B., Bass, Nicholas, Battaglia, Agatino, Bauer, Michael, Bayes, Monica, Bellivier, Frank, Bergen, Sarah E., Berrettini, Wade, Betancur, Catalina, Bettecken, Thomas, Biederman, Joseph, Binder, Elisabeth B., Black, Donald W., Blackwood, Douglas H. R., Bloss, Cinnamon S., Boehnke, Michael, Boomsma, Dorret I., Breen, Gerome, Breuer, Rene, Bruggeman, Richard, Cormican, Paul, Buccola, Nancy G., Buitelaar, Jan K., Bunney, William E., Buxbaum, Joseph D., Byerley, William F., Byrne, Enda M., Caesar, Sian, Cahn, Wiepke, Cantor, Rita M., Casas, Miguel, Chakravarti, Aravinda, Chambert, Kimberly, Choudhury, Khalid, Cichon, Sven, Cloninger, C. Robert, Collier, David A., Cook, Edwin H., Coon, Hilary, Cormand, Bru, Corvin, Aiden, Coryell, William H., Craig, David W., Craig, Ian W., Crosbie, Jennifer, Cuccaro, Michael L., Curtis, David, Czamara, Darina, Datta, Susmita, Dawson, Geraldine, Day, Richard, De Geus, Eco J., Degenhardt, Franziska, Djurovic, Srdjan, Donohoe, Gary J., Doyle, Alysa E., Duan, Jubao, Dudbridge, Frank, Duketis, Eftichia, Ebstein, Richard P., Edenberg, Howard J., Elia, Josephine, Ennis, Sean, Etain, Bruno, Fanous, Ayman, Farmer, Anne E., Ferrier, I. Nicol, Flickinger, Matthew, Fombonne, Eric, Foroud, Tatiana, Frank, Josef, Franke, Barbara, Fraser, Christine, Freedman, Robert, Freimer, Nelson B., Freitag, Christine M., Friedl, Marion, Frisen, Louise, Gallagher, Louise, Gejman, Pablo V., Georgieva, Lyudmila, Gershon, Elliot S., Geschwind, Daniel H., Giegling, Ina, Gill, Michael, Gordon, Scott D., Gordon-Smith, Katherine, Green, Elaine K., Greenwood, Tiffany A., Grice, Dorothy E., Gross, Magdalena, Grozeva, Detelina, Guan, Weihua, Gurling, Hugh, De Haan, Lieuwe, Haines, Jonathan L., Hakonarson, Hakon, Hallmayer, Joachim, Hamilton, Steven P., Hamshere, Marian L., Hansen, Thomas F., Hartmann, Annette M., Hautzinger, Martin, Heath, Andrew C., Henders, Anjali K., Herms, Stefan, Hickie, Ian B., Hipolito, Maria, Hoefels, Susanne, Holmans, Peter A., Holsboer, Florian, Hoogendijk, Witte J., Hottenga, Jouke-Jan, Hultman, Christina M., Hus, Vanessa, Ingason, Andres, Ising, Marcus, Jamain, Stephane, Jones, Edward G., Jones, Ian, Jones, Lisa, Tzeng, Jung-Ying, Kaehler, Anna K., Kahn, Rene S., Kandaswamy, Radhika, Keller, Matthew C., Kennedy, James L., Kenny, Elaine, Kent, Lindsey, Kim, Yunjung, Kirov, George K., Klauck, Sabine M., Klei, Lambertus, Knowles, James A., Kohli, Martin A., Koller, Daniel L., Konte, Bettina, Korszun, Ania, Krabbendam, Lydia, Krasucki, Robert, Kuntsi, Jonna, Kwan, Phoenix, Landen, Mikael, Langstrom, Niklas, Lathrop, Mark, Lawrence, Jacob, Lawson, William B., Leboyer, Marion, Ledbetter, David H., Lee, Phil H., Lencz, Todd, Lesch, Klaus-Peter, Levinson, Douglas F., Lewis, Cathryn M., Li, Jun, Lichtenstein, Paul, Lieberman, Jeffrey A., Lin, Dan-Yu, Linszen, Don H., Liu, Chunyu, Lohoff, Falk W., Loo, Sandra K., Lord, Catherine, Lowe, Jennifer K., Lucae, Susanne, MacIntyre, Donald J., Madden, Pamela A. F., Maestrini, Elena, Magnusson, Patrik K. E., Mahon, Pamela B., Maier, Wolfgang, Malhotra, Anil K., Mane, Shrikant M., Martin, Christa L., Martin, Nicholas G., Mattheisen, Manuel, Matthews, Keith, Mattingsdal, Morten, McCarroll, Steven A., McGhee, Kevin A., McGough, James J., McGrath, Patrick J., McGuffin, Peter, McInnis, Melvin G., McIntosh, Andrew, McKinney, Rebecca, McLean, Alan W., McMahon, Francis J., McMahon, William M., McQuillin, Andrew, Medeiros, Helena, Medland, Sarah E., Meier, Sandra, Melle, Ingrid, Meng, Fan, Meyer, Jobst, Middeldorp, Christel M., Middleton, Lefkos, Milanova, Vihra, Miranda, Ana, Monaco, Anthony P., Montgomery, Grant W., Moran, Jennifer L., Moreno-De-Luca, Daniel, Morken, Gunnar, Morris, Derek W., Morrow, Eric M., Moskvina, Valentina, Muglia, Pierandrea, Muehleisen, Thomas W., Muir, Walter J., Mueller-Myhsok, Bertram, Murtha, Michael, Myers, Richard M., Myin-Germeys, Inez, Neale, Michael C., Nelson, Stan F., Nievergelt, Caroline M., Nikolov, Ivan, Nimgaonkar, Vishwajit, Nolen, Willem A., Noethen, Markus M., Nurnberger, John I., Nwulia, Evaristus A., Nyholt, Dale R., O'Dushlaine, Colm, Oades, Robert D., Olincy, Ann, Oliveira, Guiomar, Olsen, Line, Ophoff, Roel A., Osby, Urban, Owen, Michael J., Palotie, Aarno, Parr, Jeremy R., Paterson, Andrew D., Pato, Carlos N., Pato, Michele T., Penninx, Brenda W., Pergadia, Michele L., Pericak-Vance, Margaret A., Pickard, Benjamin S., Pimm, Jonathan, Piven, Joseph, Posthuma, Danielle, Potash, James B., Poustka, Fritz, Propping, Peter, Puri, Vinay, Quested, Digby J., Quinn, Emma M., Antoni Ramos-Quiroga, Josep, Rasmussen, Henrik B., Raychaudhuri, Soumya, Rehnstroem, Karola, Reif, Andreas, Ribases, Marta, Rice, John P., Rietschel, Marcella, Roeder, Kathryn, Roeyers, Herbert, Rossin, Lizzy, Rothenberger, Aribert, Rouleau, Guy, Ruderfer, Douglas, Rujescu, Dan, Sanders, Alan R., Sanders, Stephan J., Santangelo, Susan L., Sergeant, Joseph A., Schachar, Russell, Schalling, Martin, Schatzberg, Alan F., Scheftner, William A., Schellenberg, Gerard D., Scherer, Stephen W., Schork, Nicholas J., Schulze, Thomas G., Schumacher, Johannes, Schwarz, Markus, Scolnick, Edward, Scott, Laura J., Shi, Jianxin, Shilling, Paul D., Shyn, Stanley I., Silverman, Jeremy M., Slager, Susan L., Smalley, Susan L., Smit, Johannes H., Smith, Erin N., Sonuga-Barke, Edmund J. S., St Clair, David, State, Matthew, Steffens, Michael, Steinhausen, Hans-Christoph, Strauss, John S., Strohmaier, Jana, Stroup, T. Scott, Sutcliffe, James S., Szatmari, Peter, Szelinger, Szabocls, Thirumalai, Srinivasa, Thompson, Robert C., Todorov, Alexandre A., Tozzi, Federica, Treutlein, Jens, Uhr, Manfred, van den Oord, Edwin J. C. G., Van Grootheest, Gerard, Van Os, Jim, Vicente, Astrid M., Vieland, Veronica J., Vincent, John B., Visscher, Peter M., Walsh, Christopher A., Wassink, Thomas H., Watson, Stanley J., Weissman, Myrna M., Werge, Thomas, Wienker, Thomas F., Wijsman, Ellen M., Willemsen, Gonneke, Williams, Nigel, Willsey, A. Jeremy, Witt, Stephanie H., Xu, Wei, Young, Allan H., Yu, Timothy W., Zammit, Stanley, Zandi, Peter P., Zhang, Peng, Zitman, Frans G., Zoellner, Sebastian, Devlin, Bernie, Kelsoe, John R., Sklar, Pamela, Daly, Mark J., O'Donovan, Michael C., Craddock, Nicholas, Sullivan, Patrick F., Smoller, Jordan W., Kendler, Kenneth S. and Wray, Naomi R. (2013) Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nature Genetics, 45 9: 984-995. doi:10.1038/ng.2711
Deary, Ian J., Yang, Jian, Davies, Gail, Harris, Sarah E., Tenesa, Albert, Liewald, David, Luciano, Michelle, Lopez, Lorna M., Gow, Alan J., Corley, Janie, Redmond, Paul, Fox, Helen C., Rowe, Suzanne J., Haggarty, Paul, McNeill, Gerald, Goddard, Michael E., Porteous, David J., Whalley, Lawrence J., Starr, John M. and Visscher, Peter M. (2012) Genetic contributions to stability and change in intelligence from childhood to old age. Nature, 482 7384: 212-215. doi:10.1038/nature10781
Hayes, Ben J., Pryce, Jennie, Chamberlain, Amanda J., Bowman, Phil J. and Goddard, Mike E. (2010) Genetic architecture of complex traits and accuracy of genomic prediction: coat colour, milk-fat percentage, and type in Holstein cattle as contrasting model traits. PLoS Genetics, 6 9: . doi:10.1371/journal.pgen.1001139