Mr Raul Gonzalez Pech
Higher degree by research (PhD) student
Institute for Molecular Bioscience
334 62606
Book Chapter
Bernard, Guillaume, Stephens, Timothy G., González-Pech, Raúl A. and Chan, Cheong Xin (2021). Inferring phylogenomic relationship of microbes using scalable alignment-free methods. Bacterial pangenomics: methods and protocols. (pp. 69-76) New York, United States: Humana Press. doi: 10.1007/978-1-0716-1099-2_5
Journal Articles
González-Pech, Raúl A., Li, Vivian Y., Garcia, Vanessa, Boville, Elizabeth, Mammone, Marta, Kitano, Hiroaki, Ritchie, Kim B. and Medina, Mónica (2023). The Evolution, Assembly, and Dynamics of Marine Holobionts. Annual Review of Marine Science, 16 (1). doi: 10.1146/annurev-marine-022123-104345
Davies, Sarah W., Gamache, Matthew H., Howe-Kerr, Lauren I., Kriefall, Nicola G., Baker, Andrew C., Banaszak, Anastazia T., Bay, Line Kolind, Bellantuono, Anthony J., Bhattacharya, Debashish, Chan, Cheong Xin, Claar, Danielle C., Coffroth, Mary Alice, Cunning, Ross, Davy, Simon K., del Campo, Javier, Díaz-Almeyda, Erika M., Frommlet, Jörg C., Fuess, Lauren E., González-Pech, Raúl A., Goulet, Tamar L., Hoadley, Kenneth D., Howells, Emily J., Hume, Benjamin C. C., Kemp, Dustin W., Kenkel, Carly D., Kitchen, Sheila A., LaJeunesse, Todd C., Lin, Senjie, McIlroy, Shelby E. ... Parkinson, John Everett (2023). Building consensus around the assessment and interpretation of Symbiodiniaceae diversity. PeerJ, 11 e15023, 1-77. doi: 10.7717/peerj.15023
González-Pech, Raúl A., Hughes, David J., Strudwick, Paige, Lewis, Brett M., Booth, David J., Figueira, Will F., Sommer, Brigitte, Suggett, David J. and Matthews, Jennifer (2022). Physiological factors facilitating the persistence of Pocillopora aliciae and Plesiastrea versipora in temperate reefs of south-eastern Australia under ocean warming. Coral Reefs, 41 (4), 1239-1253. doi: 10.1007/s00338-022-02277-0
Dougan, Katherine E., González-Pech, Raúl A., Stephens, Timothy G., Shah, Sarah, Chen, Yibi, Ragan, Mark A., Bhattacharya, Debashish and Chan, Cheong Xin (2022). Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts. Trends in Microbiology, 30 (9), 831-840. doi: 10.1016/j.tim.2022.02.001
Jacobus, Ana Paula, Stephens, Timothy G., Youssef, Pierre, González-Pech, Raul, Ciccotosto-Camp, Michael M., Dougan, Katherine E., Chen, Yibi, Basso, Luiz Carlos, Frazzon, Jeverson, Chan, Cheong Xin and Gross, Jeferson (2021). Comparative genomics supports that Brazilian bioethanol Saccharomyces cerevisiae comprise a unified group of domesticated strains related to Cachaça spirit yeasts. Frontiers in Microbiology, 12 644089, 644089. doi: 10.3389/fmicb.2021.644089
Gonzalez-Pech, Raul A., Stephens, Timothy G., Chen, Yibi, Mohamed, Amin R., Cheng, Yuanyuan, Shah, Sarah, Dougan, Katherine E., Fortuin, Michael D. A., Lagorce, Remi, Burt, David W., Bhattacharya, Debashish, Ragan, Mark A. and Chan, Cheong Xin (2021). Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium. BMC Biology, 19 (1) 73, 73. doi: 10.1186/s12915-021-00994-6
Stephens, Timothy G., González-Pech, Raúl A., Cheng, Yuanyuan, Mohamed, Amin R., Burt, David W., Bhattacharya, Debashish, Ragan, Mark A. and Chan, Cheong Xin (2020). Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions. BMC Biology, 18 (1) 56, 56. doi: 10.1186/s12915-020-00782-8
Chen, Yibi, González‐Pech, Raúl A., Stephens, Timothy G., Bhattacharya, Debashish and Chan, Cheong Xin (2020). Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes. Journal of Phycology, 56 (1), 6-10. doi: 10.1111/jpy.12947
González-Pech, Raúl A., Bhattacharya, Debashish, Ragan, Mark A. and Chan, Cheong Xin (2019). Genome evolution of coral reef symbionts as intracellular residents. Trends in Ecology and Evolution, 34 (9), 799-806. doi: 10.1016/j.tree.2019.04.010
González-Pech, Raúl A., Stephens, Timothy G. and Chan, Cheong Xin (2019). Commonly misunderstood parameters of NCBI BLAST and important considerations for users. Bioinformatics, 35 (15) bty1018, 2697-2698. doi: 10.1093/bioinformatics/bty1018
Liu, Huanle, Stephens, Timothy G., González-Pech, Raúl A., Beltran, Victor H., Lapeyre, Bruno, Bongaerts, Pim, Cooke, Ira, Aranda, Manuel, Bourne, David G., Forêt, Sylvain, Miller, David J., van Oppen, Madeleine J. H., Voolstra, Christian R., Ragan, Mark A. and Chan, Cheong Xin (2018). Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Communications Biology, 1 (1) 95, 95. doi: 10.1038/s42003-018-0098-3
González-Pech, Raúl A., Vargas, Sergio, Francis, Warren R. and Wörheide, Gert (2017). Transcriptomic resilience of the Montipora digitata holobiont to low pH. Frontiers in Marine Science, 4 (December) 403. doi: 10.3389/fmars.2017.00403
Voigt, Oliver, Erpenbeck, Dirk, González-Pech, Rául A., Al-Aidaroos, Ali M., Berumen, Michael L. and Wörheide, Gert (2017). Calcinea of the Red Sea: providing a DNA barcode inventory with description of four new species. Marine Biodiversity, 47 (4), 1009-1034. doi: 10.1007/s12526-017-0671-x
González-Pech, Raúl A., Ragan, Mark A. and Chan, Cheong Xin (2017). Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium. Scientific Reports, 7 (15021) 15021, 15021. doi: 10.1038/s41598-017-15029-w
Schweinsberg, M., González Pech, R. A., Tollrian, R. and Lampert, K. P. (2014). Transfer of intracolonial genetic variability through gametes in Acropora hyacinthus corals. Coral Reefs, 33 (1), 77-87. doi: 10.1007/s00338-013-1102-5
Erwin, Patrick M., López-Legentil, Susanna, González-Pech, Raúl and Turon, Xavier (2012). A specific mix of generalists: bacterial symbionts in Mediterranean Ircinia spp.. FEMS Microbiology Ecology, 79 (3), 619-637. doi: 10.1111/j.1574-6941.2011.01243.x
Data Collection
González-Pech, Raúl A., Ragan, Mark A., Bhattacharya, Debashish and Chan, Cheong Xin (2021). Genome assemblies and the associated annotations for seven Symbiodinium isolates. The University of Queensland. (Dataset) doi: 10.14264/f1b3a11
Thesis
Gonzalez Pech, Raul Augusto (2020). Genome evolution of Symbiodiniaceae. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. doi: 10.14264/uql.2020.705