Dr Son Nguyen
Higher degree by research (PhD) student
Institute for Molecular Bioscience
334 62178
Book Chapter
Costa, Rafael S., Nguyen, Son, Hartmann, Andras and Vinga, Susana (2014). Exploring the Cellular Objective in Flux Balance Constraint-Based Models. Computational Methods in Systems Biology. (pp. 211-224) Cham, Switzerland: Springer International Publishing. doi: 10.1007/978-3-319-12982-2_15
Journal Articles
Ahmed, Warish, Bivins, Aaron, Smith, Wendy J.M., Metcalfe, Suzanne, Stephens, Mikayla, Jennison, Amy V., Moore, Frederick A.J., Bourke, Jayden, Schlebusch, Sanmarie, McMahon, Jamie, Hewitson, Glen, Nguyen, Son, Barcelon, Jean, Jackson, Greg, Mueller, Jochen F., Ehret, John, Hosegood, Ian, Tian, Wei, Wang, Haofei, Yang, Lin, Bertsch, Paul M., Tynan, Josh, Thomas, Kevin V., Bibby, Kyle, Graber, Tyson E., Ziels, Ryan and Simpson, Stuart L. (2022). Detection of the Omicron (B.1.1.529) variant of SARS-CoV-2 in aircraft wastewater. Science of the Total Environment, 820 153171, 1-8. doi: 10.1016/j.scitotenv.2022.153171
Pyke, Alyssa T., Nair, Neelima, van den Hurk, Andrew F., Burtonclay, Peter, Nguyen, Son, Barcelon, Jean, Kistler, Carol, Schlebusch, Sanmarié, McMahon, Jamie and Moore, Frederick (2021). Replication kinetics of B.1.351 and B.1.1.7 SARS-CoV-2 variants of concern including assessment of a B.1.1.7 mutant carrying a defective ORF7a gene. Viruses, 13 (6) 1087, 1087. doi: 10.3390/v13061087
Jensen, Timo, Walker, Andrew A., Nguyen, Son H., Jin, Ai-Hua, Deuis, Jennifer R., Vetter, Irina, King, Glenn F., Schmidt, Justin O. and Robinson, Samuel D. (2021). Venom chemistry underlying the painful stings of velvet ants (Hymenoptera: Mutillidae). Cellular and Molecular Life Sciences, 78 (12), 5163-5177. doi: 10.1007/s00018-021-03847-1
Nguyen, Son Hoang, Cao, Minh Duc and Coin, Lachlan (2021). Real-time resolution of short-read assembly graph using ONT long reads. PLoS Computational Biology, 17 (1) e1008586, e1008586. doi: 10.1371/journal.pcbi.1008586
Zhang, Ping, Ganesamoorthy, Devika, Nguyen, Son Hoang, Au, Raymond, Coin, Lachlan J. and Tey, Siok-Keen (2020). Nanopore sequencing as a scalable, cost-effective platform for analyzing polyclonal vector integration sites following clinical T cell therapy. Journal for ImmunoTherapy of Cancer, 8 (1) e000299, 1-13. doi: 10.1136/jitc-2019-000299
Pitt, Miranda E., Nguyen, Son H., Duarte, Tânia P. S., Roddam, Louise F., Blaskovich, Mark A. T., Cooper, Matthew A. and Coin, Lachlan J. M. (2020). Complete genome sequences of clinical Pandoraea fibrosis isolates. Microbiology Resource Announcements, 9 (13) e00060-20. doi: 10.1128/mra.00060-20
Pitt, Miranda E., Nguyen, Son H., Duarte, Tânia P. S., Teng, Haotian, Blaskovich, Mark A. T., Cooper, Matthew A. and Coin, Lachlan J. M. (2020). Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing. GigaScience, 9 (2) giaa002, 1-14. doi: 10.1093/gigascience/giaa002
Raftery, Lyndon J., Howard, Christopher B., Grewal, Yadveer S., Vaidyanathan, Ramanathan, Jones, Martina L., Anderson, Will, Korbie, Darren, Duarte, Tania, Duc Cao, Minh, Nguyen, Son Hoang, Coin, Lachlan JM, Mahler, Stephen M and Trau, Matt (2019). Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing. Lab on a Chip, 19 (24), 4083-4092. doi: 10.1039/c9lc00978g
Bialasiewicz, Seweryn, Duarte, Tania P. S., Nguyen, Son H., Sukumaran, Vichitra, Stewart, Alexandra, Appleton, Sally, Pitt, Miranda E., Bainomugisa, Arnold, Jennison, Amy V., Graham, Rikki, Coin, Lachlan J. M. and Hajkowicz, Krispin (2019). Rapid diagnosis of Capnocytophaga canimorsus septic shock in an immunocompetent individual using real-time Nanopore sequencing: a case report. BMC Infectious Diseases, 19 (1) 660, 1-5. doi: 10.1186/s12879-019-4173-2
Jin, Min, Lu, Ji, Chen, Zhaoyu, Nguyen, Son Hoang, Mao, Likai, Li, Junwen, Yuan, Zhiguo and Guo, Jianhua (2018). Antidepressant fluoxetine induces multiple antibiotics resistance in Escherichia coli via ROS-mediated mutagenesis. Environment International, 120, 421-430. doi: 10.1016/j.envint.2018.07.046
Lu, Ji, Jin, Min, Nguyen, Son Hoang, Mao, Likai, Li, Jie, Coin, Lachlan J.M., Yuan, Zhiguo and Guo, Jianhua (2018). Non-antibiotic antimicrobial triclosan induces multiple antibiotic resistance through genetic mutation. Environment International, 118, 257-265. doi: 10.1016/j.envint.2018.06.004
Lu, Ji, Wang, Yue, Li, Jie, Mao, Likai, Nguyen, Son Hoang, Duarte, Tania, Coin, Lachlan, Bond, Philip, Yuan, Zhiguo and Guo, Jianhua (2018). Triclosan at environmentally relevant concentrations promotes horizontal transfer of multidrug resistance genes within and across bacterial genera. Environment International, 121 (Pt 2), 1217-1226. doi: 10.1016/j.envint.2018.10.040
Nguyen, Son Hoang, Duarte, Tania, Coin, Lachlan and Cao, Minh Duc (2017). Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode. Bioinformatics (Oxford, England), 33 (24), 3988-3990. doi: 10.1093/bioinformatics/btx537
Cao, Minh Duc, Nguyen, Son Hoang, Ganesamoorthy, Devika, Elliott, Alysha G., Cooper, Matthew A. and Coin, Lachlan J. M. (2017). Scaffolding and completing genome assemblies in real-time with nanopore sequencing. Nature Communications, 8 (1) 14515, 14515. doi: 10.1038/ncomms14515
Conference Papers
Ngo, Ha, Crew, Kathy S., Vance, Megan, Thomas, John, Nguyen, Son, Duarte, Tania, Coin, Lachlan and Geering, Andrew (2019). New achievements for diagnostics of banana streak virus. Australasian Plant Pathology Society 22nd Biennial Conference, Melbourne, Australia, 26-28 November 2019. Melbourne, Australia:
Nguyen, Son Hoang, Le, Sy Vinh and Le, Si Quang (2012). Detecting bad SNPs from illumina BeadChips using Jeffreys distance. 2012 Fourth International Conference on Knowledge and Systems Engineering, Danang, Vietnam, 17-19 August 2012. IEEE. doi: 10.1109/kse.2012.25
Thesis
Nguyen, Hoang Son (2019). Real-time analysis for Nanopore sequencing data. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. doi: 10.14264/uql.2019.642