Mr Chenxi Zhou
Higher degree by research (PhD) student
Institute for Molecular Bioscience
Journal Articles
Zhou, Chenxi and Homer, Hayden A. (2022). The oocyte spindle midzone pauses Cdk1 inactivation during fertilization to enable male pronuclear formation and embryo development. Cell Reports, 39 (5) 110789, 110789. doi: 10.1016/j.celrep.2022.110789
Chang, Jessie J.-Y., Gleeson, Josie, Rawlinson, Daniel, De Paoli-Iseppi, Ricardo, Zhou, Chenxi, Mordant, Francesca L., Londrigan, Sarah L., Clark, Michael B., Subbarao, Kanta, Stinear, Timothy P., Coin, Lachlan J. M. and Pitt, Miranda E. (2022). Long-read RNA sequencing identifies polyadenylation elongation and differential transcript usage of host transcripts during SARS-CoV-2 in vitro infection. Frontiers in Immunology, 13 832223, 832223. doi: 10.3389/fimmu.2022.832223
Chang, Jessie J.-Y., Rawlinson, Daniel, Pitt, Miranda E., Taiaroa, George, Gleeson, Josie, Zhou, Chenxi, Mordant, Francesca L., De Paoli-Iseppi, Ricardo, Caly, Leon, Purcell, Damian F.J., Stinear, Timothy P., Londrigan, Sarah L., Clark, Michael B., Williamson, Deborah A., Subbarao, Kanta and Coin, Lachlan J.M. (2021). Transcriptional and epi-transcriptional dynamics of SARS-CoV-2 during cellular infection. Cell Reports, 35 (6) 109108, 1-18. doi: 10.1016/j.celrep.2021.109108
Gliddon, Harriet D., Kaforou, Myrsini, Alikian, Mary, Habgood-Coote, Dominic, Zhou, Chenxi, Oni, Tolu, Anderson, Suzanne T., Brent, Andrew J., Crampin, Amelia C., Eley, Brian, Heyderman, Robert, Kern, Florian, Langford, Paul R., Ottenhoff, Tom H. M., Hibberd, Martin L., French, Neil, Wright, Victoria J., Dockrell, Hazel M., Coin, Lachlan J., Wilkinson, Robert J., Levin, Michael and on behalf of the ILULU Consortium (2021). Identification of reduced host transcriptomic signatures for tuberculosis disease and digital PCR-based validation and quantification. Frontiers in Immunology, 12 637164, 1-13. doi: 10.3389/fimmu.2021.637164
Zhou, Chenxi, Olukolu, Bode, Gemenet, Dorcus C., Wu, Shan, Gruneberg, Wolfgang, Cao, Minh Duc, Fei, Zhangjun, Zeng, Zhao-Bang, George, Andrew W., Khan, Awais, Yencho, G. Craig and Coin, Lachlan J. M. (2020). Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations. Nature Genetics, 52 (11), 1256-1264. doi: 10.1038/s41588-020-00717-7
Ganesamoorthy, Devika, Yan, Mengjia, Murigneux, Valentine, Zhou, Chenxi, Cao, Minh Duc, Duarte, Tania P. S. and Coin, Lachlan J. M. (2020). High-throughput multiplexed tandem repeat genotyping using targeted long-read sequencing. F1000Research, 9, 1084. doi: 10.12688/f1000research.25693.1
Shao, Haojing, Zhou, Chenxi, Cao, Minh Duc and Coin, Lachlan J. M. (2018). Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data. Scientific Reports, 8 (1) 16616, 16616. doi: 10.1038/s41598-018-34774-0
Wu, Shan, Lau, Kin H., Cao, Qinghe, Hamilton, John P., Sun, Honghe, Zhou, Chenxi, Eserman, Lauren, Gemenet, Dorcus C., Olukolu, Bode A., Wang, Haiyan, Crisovan, Emily, Godden, Grant T., Jiao, Chen, Wang, Xin, Kitavi, Mercy, Manrique-Carpintero, Norma, Vaillancourt, Brieanne, Wiegert-Rininger, Krystle, Yang, Xinsun, Bao, Kan, Schaff, Jennifer, Kreuze, Jan, Gruneberg, Wolfgang, Khan, Awais, Ghislain, Marc, Ma, Daifu, Jiang, Jiming, Mwanga, Robert O. M., Leebens-Mack, Jim ... Fei, Zhangjun (2018). Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Nature Communications, 9 (1) 4580, 4580. doi: 10.1038/s41467-018-06983-8
Zhou, Chenxi, Duarte, Tania, Silvestre, Rocio, Rossel, Genoveva, Mwanga, Robert O. M., Khan, Awais, George, Andrew W., Fei, Zhangjun, Yencho, G. Craig, Ellis, David and Coin, Lachlan J. M. (2018). Insights into population structure of East African sweetpotato cultivars from hybrid assembly of chloroplast genomes. Gates Open Research, 2 41, 41. doi: 10.12688/gatesopenres.12856.1
Cao, Minh Duc, Ganesamoorthy, Devika, Zhou, Chenxi and Coin, Lachlan J M (2017). Simulating the Dynamics of Targeted Capture Sequencing with CapSim. Bioinformatics (Oxford, England), 34 (5), 873-874. doi: 10.1093/bioinformatics/btx691
Zhang, Li Feng, Xi Zhou, Chen, He, Rong, Xu, Yuan and Ling Yan, Meng (2015). A novel fitness allocation algorithm for maintaining a constant selective pressure during GA procedure. Neurocomputing, 148, 3-16. doi: 10.1016/j.neucom.2012.07.063
Zhou, Chen-Xi, Liang, Xun and Qi, Jin-Shan (2015). A semi-supervised agglomerative hierarchical clustering method based on dynamically updating constraints. Acta Automatica Sinica, 41 (7), 1253-1263. doi: 10.16383/j.aas.2015.c140859
Conference Papers
Zhang, Haiyan, Zhou, Chenxi, Liang, Xun, Zhao, Xi and Li, Yaping (2016). A Novel Edge Weighting Method to Enhance Network Community Detection. IEEE International Conference on Systems, Man, and Cybernetics, SMC 2015, Kowloon Tong, China, 9-12 October 2015. Piscataway, NJ United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/SMC.2015.42
Zhang, Li Feng and Zhou, Chen Xi (2012). Self organized parallel genetic algorithm to automatically realize diversified convergence. 2012 IEEE Congress on Evolutionary Computation, CEC 2012, Brisbane, QLD, Australia, 10-15 June 2012. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/CEC.2012.6256642
Thesis
Zhou, Chenxi (2019). Development of computational tools for analysis of polyploid plant genomes with application to hexaploid sweetpotato. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. doi: 10.14264/uql.2019.320